Thiothrix lacustris: RCF98_03130
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Entry
RCF98_03130 CDS
T09396
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RCF98_03130 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_03130 (mfd)
Enzymes [BR:
tlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCF98_03130 (mfd)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RCF98_03130 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SWI2_SNF2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WML91353
LinkDB
All DBs
Position
667389..670874
Genome browser
AA seq
1161 aa
AA seq
DB search
MPALLKPHLPPAPNGHIRWGQLYGCSHEWLIAQSAQGFDGLLLLVVPDVHAAYQAESALQ
FFAPDIPSHIFPDWETLPYDVFSPHEDIISERLKTLATLQNLKRGILIVPASTLLHRLAP
PGYVHGHTFVVRKGSPLDIDKLRKQLEEAGYRNVSQVMEHGEYATRGSLVDLFPMGSNTP
YRLDLFDDEIDSIRTFNPETQLTEEKVDSIELLPAREFPLDEAGIRTFRQNYRAQIEGDL
TRSRIYEGVSQGKPSAGIEYYLPLFFEHTATLFDYLPKKTLLVLTEGVDTAISRFWKSLE
DRYEQRRHDIERPLLAPEKLFLTAAMLGSYLTDYPRVEAQHRRGVLHTPSSSDHDAEEGR
MQYAPTVDYPVSALPSLLIHARQEQPLFLLLNFIKDLKGRVLFTAESAGRREAFLTLLKD
NGIVVKTLETWQDFLGSKAEMAVTVAPLENGFWLPDAKIAVIPENLLHGVQIQQQRRRRK
ATRDADAIIRNLTDLNEGAPVVHEEHGVGRYLGLETVTAGGVTAEYLLIEYANHDKLYVP
VAALHLVSRYTGADPEHAPLHRLGNEQWDKARQKAAEKARDVAAELLDIHARRAAQQGHS
FPFEDNDYRLFAGAFPFEETPDQALAIENVIKDMRAPQPMDRVVCGDVGFGKTEVAMRAA
FVAANAGKQVAMIAPTTLLTQQHLNNFLDRFADWPFNIESLSRFKTGKETSKALEALASG
KIDIVIGTHKLLQDDVHFKQLGLVIIDEEHRFGVRDKEQMKKLRANVDMLTMTATPIPRT
LNMSLSGLRDLSIIATPPTQRHAIKTFVCEWNKTIIQEACARELSRGGQVYVLHNEVKTI
ANVEAELSAMLPGVTVRHAHGQMRANELESIMSDFYHQRFQILIATTIIESGIDVPTANT
ILINRADKLGLAQLHQLRGRVGRSHHRAYAYLIAPPKSALTPDAVKRLEAIASLEELGVG
FTLATHDLEIRGAGELLGEGQSGQIQEIGFNLYNDLLERAVKALKSGKVPELSATSRRTT
VELGAPALIPDAYLPDVHARLILYKRIASAESQAALDELRVEMIDRFGLLPEPTKTLFSV
TRVKLLAQELGIRKLDMHVKGGRIIFDDKPNIDPMKVITLIQKRPWVFKLDGQDKLRFEI
ELPTVEEREEWVVKLMGEIGG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcattgctcaagcctcatcttcctcccgcccccaatggacacatccgctggggg
cagttgtacggttgctcccacgaatggctgattgcccagtctgcccaagggtttgatggc
ctgttactactggtcgtcccggatgtacatgccgcttatcaggccgaatccgcgctgcaa
ttctttgcccccgatattcctagccacatatttcctgactgggaaaccctaccctacgac
gtattttcaccgcacgaagacattatttccgagcgcctgaaaacgctggcgacgctgcaa
aatctcaaacgcggcatcctcatcgtgcctgccagcaccttgctgcaccggctggcgcca
cccggttacgtgcatggccacacctttgtagtgcgcaaaggttcaccgctcgacatcgac
aaattgcgcaagcaactcgaagaagcaggctaccgcaacgtcagccaggtgatggaacac
ggcgaatacgccacccgtggctcgttggtcgatctgttcccaatgggtagcaacacacct
taccgccttgatttgtttgacgacgaaatcgactcgatccgcaccttcaacccggaaacc
cagctcaccgaagagaaggtagacagcattgaactgctacctgcccgcgaattcccgctg
gatgaagccggaatccgcaccttccgccagaactaccgagcgcagattgagggcgatttg
acccgcagccgcatttacgaaggcgtgagtcagggcaagccttccgccgggatcgagtat
tacctgccgctgttctttgagcataccgccacgctgttcgattacctgccgaagaaaacc
ctgctggtgctaaccgaaggggttgatactgccatcagccgcttctggaaatcgctcgaa
gaccgctatgaacaacggcggcatgatattgaacgccccttgctggcgccggaaaagctg
tttttgacggcggcgatgttggggagttatttgacggattaccctcgggttgaagcgcag
catcgtaggggcgtattgcatacgccctcttcctccgatcatgatgccgaagaagggcgt
atgcaatacgcccctacggtggattatccggtttctgccctgccctcgctgctgatccac
gcccgtcaggaacaaccgctgttcctgctgctcaatttcatcaaagacctgaaaggccgg
gtgctattcaccgccgaatccgctgggcggcgcgaagccttcctcacgctgctgaaagac
aacggtatcgtggtcaaaacactggaaacctggcaggatttcctcggtagcaaagccgaa
atggcggttacagtcgcgccgctggaaaacggtttctggctgcccgacgcgaagattgct
gtcatccccgaaaacctgctgcacggggtgcaaatccagcagcaacgccgtcgccgcaaa
gccacccgcgatgccgacgcgattatccgcaacctgaccgacctcaacgaaggcgcacct
gtggttcatgaggaacacggggttgggcgttatctggggctggaaacagtcacggcaggc
ggggtgacggcggaatatttgctgatcgaatacgccaaccacgacaagctgtacgtcccc
gttgccgcgctgcatctggtcagccgttacaccggggctgacccggaacacgcgccgctg
caccgcctcggcaatgagcagtgggacaaggcacgccaaaaagcagcggaaaaggcgcgg
gatgtggcggcggaattgctcgacatccacgcccgccgtgccgcgcaacaggggcatagc
ttcccgtttgaagacaacgattaccgcctatttgcgggcgcgttcccgtttgaagaaacg
ccggatcaggcgctggcgattgaaaacgtgatcaaggacatgcgagcgccgcagccgatg
gatcgggtggtgtgcggcgacgtgggtttcggcaagaccgaagtagcgatgcgggcagcc
ttcgtggcggcgaatgcgggcaagcaggtggcgatgattgcgccgacgaccttgctgacc
cagcagcatttgaacaatttcctcgaccgttttgccgattggccattcaatatcgaatca
ttgtcgcgcttcaagacgggcaaggaaaccagcaaggcactggaggcactcgcgtccggc
aagatcgacatcgtgatcggtacgcacaagctgttgcaggacgatgtgcatttcaagcaa
ctggggctggtgatcatcgacgaagaacaccgcttcggggtgcgcgacaaggagcagatg
aaaaagctgcgtgccaatgtcgatatgttgaccatgaccgccacgccgattccgcgcacg
ctgaatatgtcgctgtcgggcttgcgcgatttgtcgatcattgccaccccgccgacgcaa
cgccacgcgatcaagactttcgtgtgtgagtggaacaagaccatcattcaggaagcgtgt
gcgcgcgaattgtcacgcggcgggcaggtgtacgtgctgcacaatgaggtcaaaaccatt
gccaatgtggaggcggaactgagcgcgatgttacccggtgtgacggtgcgccatgctcac
gggcagatgcgggcgaatgagttggaaagcatcatgagcgacttttaccaccagcgtttc
cagattctgattgccaccaccatcattgaaagcggcatcgacgtgccgaccgccaacacg
attctgatcaaccgtgccgacaagctggggctggcgcagttgcaccagttgcgcgggcgg
gtcgggcgttcgcaccaccgcgcttacgcttatttgattgcgccgccgaaatccgcgctc
acgccggatgcggtcaagcggctggaagcgattgcatcgctggaagaactgggggtcggt
ttcacgctggcgacgcacgatctggagattcgcggtgcgggcgaattgctcggcgaaggg
caaagcgggcagattcaggaaatcggtttcaacctctacaacgacttgctggaacgcgcg
gtgaaggcgttgaagtcgggcaaagtgccggaactgagcgccaccagccgccgcaccacg
gtggaattgggtgcgcctgcgctgatcccggacgcttatttgccggatgtccatgcgcgg
ctgatcctctacaaacgcattgccagcgcagaatcgcaggcggcactggacgaattgcgg
gtggaaatgatcgaccgcttcgggctgctgccagagccgaccaagacactgttcagcgtc
acgcgggtcaagctgctggcgcaggaactgggcatccgcaagctggatatgcacgtcaag
ggcgggcggattatcttcgacgacaagccgaatattgacccgatgaaggtgattaccctg
atccagaaacgcccgtgggtgtttaagctggatgggcaggataagttgcggtttgagatt
gaattgccgaccgtggaggagcgggaggagtgggtggttaagttgatgggggagattggc
ggataa
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