Thermovirga lienii: Tlie_0771
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Entry
Tlie_0771 CDS
T01644
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tli
Thermovirga lienii
Pathway
tli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tlie_0771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tli03400
]
Tlie_0771
Enzymes [BR:
tli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tlie_0771
DNA repair and recombination proteins [BR:
tli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tlie_0771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
ResIII
CarD_TRCF_RID
AAA_30
ERCC3_RAD25_C
PhoH
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AER66504
UniProt:
G7V9F4
LinkDB
All DBs
Position
806736..809861
Genome browser
AA seq
1041 aa
AA seq
DB search
MVRYINNLKDLDEKEHKDRSRIHLKGKTSALAWISRGLTPPVLFVLPDKRTQEDFLVDWA
SISGKDKETSVLLELPLTQEGFENEALKIKRGQTLVDWNNDKGYMVATSSSLMAPFILPG
RVFQVKRRSLVDRDELLEWLSKEGYERVDIVWLPGQYVSRGSIVDVFSPGDKNPVRIEFF
DDAVESVRFFRIEDQRSIELVDEVCLLSLKGRGKTPLRDLIPLDTKVVLYEPSEIDKNAS
DWRWLAEAIYKDAKGGDLVPLSWGEVLRSFSDVKVFEVTKNLALADFRTKIEEIPPFKGD
VRAYRDFVRYWIGKSYDVHVFCSDKDEILLEHNNSICVKTGKITGGFIDHCSQVVYLSEF
ELHGIPIANEREVSSGPPLEWNELVARSTYVVHEDYGIAKNLGLETLTIDGMSTDFVVLE
FTEKKRLMVPLLQLYKITPYYVPETLEVKLDSLRGKAWAKSKAKARERAQKAAEMLVAMY
SQRETIKAKPCSKDGEIIKKLESDCPFPLTKDQEKAVMAIKKDLESDRPMDRLLVGDVGI
GKTEVAIRAAVKMVENGRQVFVLAPTTILSQQHYRTFKIRCAGLPINIEHISRFSSSSEE
RRIKEKLASGEVDILIGTHKLLQKDVKVKDLGLVIIDEEHRFGVLHKELPKFIDPSVHVL
TMTATPIPRTLYLALGGLRDLSIINTQPYRRKPVITYIGTWDPLLVKQAILREKNRGGQV
FYIHNRVETISQRASFLSNLLPGVRLGVAHGRMKEKELSRVMDKFIAKEIDVLLCTTIVE
SGLDIPSANTLIVDNSQDLGLAQLYQLRGRIGRREEQAFAFFMYPKEEVLTIEARERLEA
IADLGEGLTGYELARRDLQIRGGGEILGLRQHGHMERVGFHLYCKMLEEEVRKIRGKEEE
SLQTHVDVRLPLSFPSHFMPQSSVRVAFFRRLLRSESLEEVYALEGEARDRFGKLPESMK
FLFAIARVKLIGPKVGITSVRCTEEETLVWSKSKDIISRLPSKEWFYKSDGSIVGPGGYR
GLPILDRALLSFLGMAKEEVK
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggttagatatataaacaacttaaaggatctagacgaaaaagagcataaagatcgaagc
agaattcacttaaaaggcaaaactagtgccttggcttggatttcaagggggttaactccc
cctgttttgtttgttttgccagataaaaggacgcaagaagatttcttggtggactgggcg
tctatatcaggcaaggataaagaaacgagcgttttattggagttacctttgacccaagag
gggtttgaaaatgaagcgctcaagataaaaagaggtcagaccctagtagattggaacaac
gataaagggtatatggttgccacctcttcatctcttatggctcctttcatacttcctgga
agagtgtttcaagtaaaacgacgtagtctggttgatagagacgaacttttagaatggctt
tcgaaagaagggtatgagagggtagatattgtttggttgccagggcagtacgtcagtaga
ggcagcatagtagatgtttttagccccggagacaaaaaccctgtcagaatagagtttttc
gatgacgctgtggagagcgttcgtttctttaggatcgaagaccaaagaagcattgaacta
gtagatgaagtgtgccttttaagtttaaagggcagagggaaaacgcctttaagggatttg
attccgttggacaccaaagtggtgttgtatgaacctagcgaaatagacaaaaacgccagc
gattggcgttggttagctgaggcaatttataaagacgctaaagggggagatttggttcct
ttaagttggggagaagttttgaggtctttctccgatgtcaaagttttcgaggtcaccaag
aatttagctttggccgatttcaggaccaaaatagaggaaattcctccctttaaaggagat
gtcagggcctatcgggattttgttagatactggataggaaagagctatgatgtgcatgtt
ttttgttctgacaaggatgaaattttgctggagcataataacagtatatgcgtcaagaca
ggtaaaataactggaggttttatagatcattgttctcaagtagtttatttgagcgaattt
gagctgcatggtattccgatcgcaaatgaaagggaagtttcttcaggtccacctctggag
tggaatgagttggtagctaggtccacatatgtggtgcatgaagattatggtatagccaaa
aatttgggtttagagaccctaacaatagatggcatgtccaccgatttcgtggttctcgaa
tttacggagaaaaaacgcctgatggttccccttttgcagctttacaagataacgccttat
tacgttcctgagacgttggaggtaaagctagacagtcttagaggaaaggcgtgggccaag
tccaaagccaaggcaagggaaagggctcaaaaagctgcagaaatgcttgtagcaatgtac
tcccagagggaaactataaaagccaaaccctgcagtaaggatggggagattataaagaaa
cttgaatctgattgtccattcccacttactaaggaccaagaaaaggccgtaatggcaatt
aaaaaagatcttgaatcggatagacccatggaccgtttgcttgttggagatgtaggcata
ggaaaaactgaagttgctattagggctgcagtgaagatggtagaaaatgggcggcaggtt
tttgtattggctcctactacgatcctttcccagcaacactacaggacattcaagatcaga
tgtgcaggtttgcctataaatatagagcatatatccaggttttcgtcttcctctgaagag
aggcgcataaaggagaaattggcctctggagaagtggacatcctgataggaacccataag
ctgctccagaaagacgtgaaagtcaaggatttgggccttgttataatagacgaagaacat
cgctttggggttcttcacaaggagttacctaaatttatagatcccagtgtacacgtcttg
accatgacggcaacccccatacctaggaccctgtatcttgctttgggcggccttagggac
ctctcgataataaacacccaaccatacagacgtaagcccgtaataacttatattgggact
tgggatcccttgttggtgaaacaggctatattaagggaaaaaaacagagggggacaggtc
ttctatatccataatagagtggagaccatcagtcaaagagcgtcgtttttgtccaacctt
ttacctggcgtcagactaggtgtagctcatggaaggatgaaggagaaggaattgagccgg
gtcatggacaaattcatagcgaaagagatcgatgtcctgttatgtactaccatcgtagaa
agtggcttggatatcccctccgccaacactctaatagttgataattctcaggaccttggg
ttggctcagctctaccagcttaggggaaggataggaagaagagaggaacaagcctttgcc
ttttttatgtatcccaaggaggaggttctcactattgaagcaagagaaaggttggaagcg
atagccgatttgggagagggcttgacaggctacgagttggcaaggcgagatttacaaatt
agaggaggcggagaaattttgggcttgcgccagcatggacatatggaaagagtggggttc
catctgtactgtaagatgctagaggaagaagttagaaaaattagagggaaagaggaggag
tctttgcagacccacgtggatgtgaggttgccgctatcttttccttcccatttcatgccc
cagtcatcggttagggtggcctttttccgtaggttgttgagaagcgaatcgctggaagag
gtgtatgctttggaaggggaggccagggataggttcggaaagctaccagagagcatgaag
tttttgtttgccatagcaagggtaaagctcataggtcctaaggtaggcattacaagtgta
agatgcacagaagaagagacattggtgtggagcaaaagcaaagatataatatctaggttg
ccatccaaggagtggttttacaaatctgatggtagtatagtggggccgggcggatatcga
ggtttgcctattttggatagagcgcttttaagctttttaggaatggccaaggaggaagtt
aaatga
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