Thiorhodovibrio litoralis: Thiosp_01554
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Entry
Thiosp_01554 CDS
T09560
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tlr
Thiorhodovibrio litoralis
Pathway
tlr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thiosp_01554 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlr03400
]
Thiosp_01554 (mfd)
Enzymes [BR:
tlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thiosp_01554 (mfd)
DNA repair and recombination proteins [BR:
tlr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thiosp_01554 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WPL11802
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All DBs
Position
complement(1741811..1745413)
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AA seq
1200 aa
AA seq
DB search
MSAAFPASAHLGEDNAQPTKRACSPLAPHLPQPPSERLLWGRLYGAAGALAIASAARQAD
GPLLVVVPDMAAANGLHAELPFFLDDKGDDRGNEEAERLPVWRFPDWETLPYDLFSPLPE
LVSERLLTLYRLPQLERGVLLAPVGTLMQRLPPRHYVESQALVLAIGDRLDLDQTRQRLT
DAGYQCVSQVIAHGEFAVRGALLDIFPMGQTEPLRIDLFDDEIESIRTFDPDSQRSIAKL
ESVRMLPAREFPFTEEAISAFRQRYRASIDSDPRASMIYREVSEGRLPGGIEYYLPLFFD
ETATLFDYLPEHTLAFESAEVRESAATFIDTIATRFEQRCHDVERPILPPRQLYLDADEL
AGKLNTMPGVCWQTTEVAQRRKGYAQVVNFATAGLPPLQIQARAAEPAAALKAFVNEPGR
RVLFVAESGGRRELLRDHLHGFGIQPAAVGDWAAFVNGEDPIAITVAPIEQPLLLEAVPE
GGLPAGDAQQSSRLALITETQLYGERVRQERRRRKQGPDGDAVVRNLTELHPGAPVVHED
HGVGRFLGLQTLEFGGNKAEFLALEYSGGDKLYVPVSSLHLIARYTGSSPESAPLHKLGS
DHWDRVKRKAAQKARDVAAELLDIYARRAARLGHAFGDPSAEYRDFAAAFEFEETPDQER
AIESILADMADPKPMDRVVCGDVGFGKTEVAMRAAFVAANGGRQVAVLVPTTLLAQQHYQ
NFADRFADWPIRVESLSRFRSAKEVKTIIDDLAAGTVDIVVGTHKLLQPSIKFKNLGLAI
IDEEHRFGVRHKEQLKSLRAEVDILTLTATPIPRTLNMSMAGLRDLSIIATPPVERHPIK
TFTSAWNDSLIQEACQREINRGGQIYFLHNEVETIENMAQKIEALVPDARVQVAHGQMRE
KELERVMRDFYHRRFNLLVCTTIIESGIDVPSANTILINRADKLGLAQLHQLRGRVGRSH
HRAYAYLITPPAKTMTADAKKRLEAIESLEDLGAGFTLATHDLEIRGAGELLGEEQSGQI
HEVGFTLYMDLLERAVQALKAGRTPELDRPLDHGAEIDLGLPALLPDDYLPDIHTRLITY
KRIASAADTNELKELKVEMIDRFGLLPEPAKNLFTITELKLKVQPHGIRKIEAGPKGGRI
LFGEEPKIDHMRLVQLIQSRPKEFKLDQSAGALRFYRDMPEGDKRAAQVDTILGQLTGQT
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgcctttcccgcgtccgcgcaccttggcgaggacaacgcgcaaccaaccaag
cgcgcgtgctctccgctcgccccacacttgccccagccgccatcagagcgcttgctatgg
ggtcggctctatggcgcagcgggggcactggccatcgcctcggcggcccgccaggccgat
ggcccgctgctggtggtggtgcccgacatggcagcggccaacgggctgcacgcggagctg
ccgttttttctggatgataaaggggacgatcgggggaacgaagaggccgagcgattgccg
gtgtggcgcttcccggactgggaaaccctgccttatgatctgttctcgccgctgccggag
ctggtttccgagcggctgctgacgctttatcgcctgccgcagcttgaacgcggcgtgctg
ctggcaccagtcggtaccctgatgcagcgcctgccgccacgccattatgtcgagagccag
gcattggtactggccatcggcgaccggctcgatctcgaccagacccgacagcggctgacc
gatgcaggctatcagtgcgtgtcgcaggtcatcgcccatggcgagttcgcggtgcgcggt
gctttgcttgatattttcccgatgggccagaccgagccgctgcgcatcgatctgttcgac
gatgagatcgagtccatccgcaccttcgacccggacagccagcgctccatcgccaagctg
gagtcggtgcgcatgctgccggcgcgggagtttcccttcaccgaggaggccatcagcgcc
tttcgccaaaggtatcgcgccagcatcgatagcgacccgcgcgccagcatgatctaccgc
gaggtctccgagggccggctgccgggtggcatcgagtattacctgccgctttttttcgat
gagaccgcgaccctgtttgactacctgcccgagcacacgcttgccttcgagagcgccgag
gtgcgcgagagtgcggcaaccttcatcgacaccatcgccacgcgcttcgagcagcgctgc
catgatgttgagcgcccgattctgccgccgcggcagctgtatctggatgccgacgaactc
gccggcaagctcaataccatgcccggtgtgtgctggcaaaccacggaggtggcgcagcga
cgcaaaggctatgcgcaggtggtgaactttgccaccgccgggctgccgccactgcagatt
caggcccgcgcggccgagccggcagcagcgctcaaggcctttgtgaacgagcccgggcgc
cgggtgctcttcgtcgccgagagcggcggccggcgcgagctgctgcgcgatcatctgcac
ggctttggcattcagccggcggcggtcggcgactgggcggctttcgtcaatggcgaagac
cccatcgccatcacagtcgcgcccatcgagcagccgctattgcttgaggccgtgcctgag
ggcggtctgcccgcaggagacgcacagcagagcagccgcctcgcgctcatcaccgagacc
cagctctatggcgagcgggtgcgccaggagcgtcgccgacgcaaacaagggccggacggc
gatgcggtggtgcgcaacctgaccgaattgcatcccggcgcgcccgtcgtccacgaggat
catggtgttgggcgctttctcggcctgcaaaccctggagttcggcggcaacaaggccgag
ttcctcgcgctcgaatactcaggcggcgacaagctctatgtgccggtcagctccctgcat
ctgatcgcgcgctacaccggcagctcgcccgagagcgcgccgttgcacaaacttggcagc
gaccactgggatcgcgttaagcgcaaggcagcacagaaggcgcgcgatgtcgccgccgag
ttgctcgacatctacgcccgccgcgccgcgcgcttagggcacgcctttggtgatccgagc
gccgagtaccgcgactttgccgccgcctttgagttcgaggagacgccggatcaggagcgc
gccattgagtcgatcctcgccgacatggccgatcccaagccgatggaccgcgtggtgtgc
ggcgatgtcggcttcggcaagactgaggtcgccatgcgcgcggccttcgtcgccgccaat
ggcgggcgccaggtcgcggtgctggtgccgaccactctgctcgcccagcagcactatcag
aacttcgccgaccgcttcgccgactggccaatccgcgtcgagagcttgtcccggttccgc
agcgcaaaggaggtcaagacgatcatcgacgacctcgccgctggcaccgtcgacatcgtc
gtcggcacccacaagctgttgcagccgtcgatcaagttcaagaatcttgggctagccatc
atcgacgaggagcaccgctttggcgtgcgccacaaggagcagctcaaaagcctgcgcgcc
gaggtggatattctcacactgaccgccacccccatcccgcgaaccctcaatatgtccatg
gccggcctgcgcgatctgtccatcatcgccaccccaccggtcgagcgccatccgatcaag
accttcacctcagcctggaacgacagtctgatccaggaagcctgtcagcgcgagatcaat
cgcggcgggcagatttactttctgcacaatgaggtcgagaccatcgagaacatggcgcag
aaaatcgaggcattggtgccggatgcgcgggtgcaggtcgcccacggccaaatgcgcgag
aaggagctcgagcgcgtcatgcgcgacttctatcaccgccgcttcaacctgctggtgtgc
acgaccattattgaatccggcatcgacgtgcccagcgccaacaccatcctaatcaaccgc
gccgacaagctggggctggcgcaactgcatcagctccgaggtcgcgtcgggcgctcgcat
catcgcgcctatgcctacctgatcaccccgccggccaagaccatgacggcggatgccaaa
aagcgtctggaggcgattgaatcattggaagacctgggcgccggcttcaccctggccacc
cacgatctggaaattcgcggtgccggcgagctactcggcgaggagcaatccggccagatt
cacgaagtcggcttcaccctttatatggatctgctcgaacgcgccgtgcaggcgctcaaa
gccgggcgcacgccggagctggaccgcccgctcgaccatggcgccgagatcgatcttggc
ctccctgccctgctaccagacgactacctgcccgacatccacacccggctcatcacctac
aaacgcatcgccagcgccgccgatacgaatgaattgaaagagctaaaagtcgagatgatc
gaccgcttcggcctgctgcccgagccggccaagaacttgttcacaatcaccgaactgaag
ctcaaggtccagccccacggcatccgcaagatcgaagcaggccccaagggcgggcgcatt
ctgttcggcgaggagcccaagatcgaccacatgcgcctggtgcaactgattcaaagccgg
cccaaggagttcaagctcgaccagagcgccggggcgctgcgcttctatcgcgacatgccc
gagggcgacaaacgcgcggcacaggtcgataccattttggggcaactgaccgggcagacc
tga
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