Thermotoga maritima MSB8: TM1450
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Entry
TM1450 CDS
T00022
Name
(GenBank) transcription-repair coupling factor, putative
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tma
Thermotoga maritima MSB8
Pathway
tma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TM1450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tma03400
]
TM1450
Enzymes [BR:
tma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM1450
DNA repair and recombination proteins [BR:
tma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TM1450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
AAA_30
SecA_DEAD
DctP
AAA_16
IstB_IS21
ERCC3_RAD25_C
AAA_25
AAA_5
RecG_dom3_C
P4Ha_N
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AAD36518
UniProt:
Q9X1G2
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All DBs
Position
1465252..1467933
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AA seq
893 aa
AA seq
DB search
MVEILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENLKIATT
LKALTEKVFSPDFLRENSLMIARSTKLTLSPEKLVEMGYELVFTVQNVGEFAIRGDIIDI
YSPGNDFPVRIELFGDEIEEIRFFKVDTQRSFQGVDKTLILPFVDFYGESTLLDFLKTDA
RFICEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVILKNVEKGSAPLSTRVEKKE
SLPILDVDEIEEGGLVVHREHGIAIFEGIVRLKGVLGERDYLKLKYEDAILYVPIEKIDR
VHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIKELVELYMKRQEAQGLSLPGDPEL
EEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASG
KQVAVLVPTTVLARQHYENFKERMEPFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIG
THSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSG
MKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKL
KRMFPELEIAVAHGKMSRKTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAQ
RYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDME
LRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIP
EDYVQNPVERLRLYRRLASSLDEEDLEEILEEMKDRFGEPPEEVKLLVDYFRLRVRASKL
GIKKIRFDHSMVEIFPSRNSPFLNHPRYDRRSGSVVLYTRKDPVEFLMDMLKK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggttgagattcttctgctgccgaacgaaaggttttcgaatatagaaggatacattttc
tatccttcgagagatgttttgcctctcgaagatgttgttttgtcacccgagataaaagga
aaaagaatagaaatcctgtggaggcttctaaacggggagaacctcaagatagccactacc
ctgaaagcgctcaccgaaaaggtgttctcacccgattttctgagagaaaactccctgatg
atagcacgatccacaaaactcacgctgtccccagaaaaactcgtcgaaatgggatatgaa
cttgttttcactgttcagaacgtgggagaatttgccattcgcggagatataatcgacatt
tactctccagggaacgactttcccgtgaggatagaactgtttggagacgaaattgaagaa
attcgtttcttcaaggtagacacccagcgttcattccaaggtgttgataagactctgata
cttccttttgttgatttctacggtgaaagcaccttgcttgatttcttaaagacagatgct
cgcttcatctgtgaagatcttcaaaaggttctggatgagtacagaaagttcagaaaagaa
atgagggaccttttgaaggaacgctacaacgacttcttcgatgaaagagtagtcgaagtg
atactcaaaaacgttgagaagggttctgcaccgctatcaacacgtgttgagaaaaaagaa
tcgctgcccattctggatgtcgatgagatcgaagagggtgggctcgtagttcacagagag
cacggaatagccattttcgaggggattgttcgtctcaagggagttctcggagagagggat
tatttgaagttgaaatatgaagacgcaattttgtacgttcccatcgagaagatcgacaga
gttcataaatatataggtgatccttcgcaggttaaactcgaccggatgaaccgcggaaaa
tggaaacaaacactgaagaaagtgagagaagacatcgagaaaaagatcaaagaactcgtt
gaactttacatgaaaagacaggaggcccagggtctttctcttccaggtgacccagaactg
gaagaaaaattcgcggaatcttttccatacattgaaactcctgatcagcagcagagtata
gaagaagtactaagcgatcttgcctctgaaaaaccaatggacaggctcctgtgtggagac
gcgggtgttggaaaaacagaagtagctctgcgagctgcgtttcgtgcagtcgcatctggt
aagcaggtagcggtgctcgtcccaaccaccgttctggcaagacaacactacgagaacttc
aaagagagaatggaaccgttcggtgtaaaagtggaactcctggacagttcaagaacagcg
agagaaaagaaggagatcatcgaaaagctgaagaagggagaaatagacatcatcataggt
acacactctctgctgaacgaacggatcgaattctccgatcttggtcttgtcatcatcgac
gaagaacaaaagtttggagttgagcaaaaagaaagattcaagaaactgagactctcggtg
aacgtgctaaccctgagtgctacacctattccacgcaccctccacatggccctctctgga
atgaaagatttttctgtgataaattctcctccccctggaagaaaaccagtatacgtttat
gtcgcagagtacagcgatgatctcgtcaagggagcggtgatcagggagataaacagggga
ggtcaggtgatctacgttcacaaccgcgtggaagaactaccggaggttttcgaaaaactg
aaaaggatgtttccggagttggaaatagcggttgcccacggaaagatgtccagaaaaacc
atggagagaattgtccacgagttctaccgcgggaacatcgatgttcttctgtgtaccaca
attatcgagaatggtgttgatataccgaatgcaaacacactcatagtggatgacgcacag
agatacggcctttcacagctctatcagctcagaggaagggtgggtagaagcgaccgaagg
gcctttgcgtacttcctgtacccgaagggtactccaagaagcgctcttgaaagactgaag
gtgcttaaatcctacacaggctttggaagcggtcttcaaatagcactgaaagatatggaa
ctgagaggtgtgggagatgtcctcggtttggaacaacatggaaacgttgtgtccgtcggt
ttgaaactgtacaacgaaatcttgaaagagaccatcacgagattcaaagaaagacgaatc
gaaaagaaacactctgtgaacgttgaaatagaaaatcctccgggcagatttttcataccg
gaagattacgtgcaaaatcctgtggagaggttgagactttacagaagactcgcctcctct
cttgatgaggaagatctcgaggaaatactggaggagatgaaggatagattcggagaacca
cccgaagaagtgaaattactcgttgattacttcagattgagagtcagggcctcgaagctg
ggaataaagaagatcaggttcgatcactcgatggtggaaatctttccaagcaggaactcg
ccgtttttgaatcacccgagatacgatcgacggtcagggagtgttgttctctacaccagg
aaggatccggtggagtttctcatggatatgttgaaaaaatga
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