Tenacibaculum maritimum: MARIT_0063
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Entry
MARIT_0063 CDS
T05240
Symbol
mfdA
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmar
Tenacibaculum maritimum
Pathway
tmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MARIT_0063 (mfdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmar03400
]
MARIT_0063 (mfdA)
Enzymes [BR:
tmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MARIT_0063 (mfdA)
DNA repair and recombination proteins [BR:
tmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MARIT_0063 (mfdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
SFZ79984
UniProt:
A0A2H1E6F0
LinkDB
All DBs
Position
49401..52742
Genome browser
AA seq
1113 aa
AA seq
DB search
MSKQTIVNQYQKSAKIKQILSKLQQEQTHFQITNLVGSSLSFVISETFKKVERPYLLIFK
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAV
IVTYPTALFEKVVTKKELEKNTLKVNVGENLSLDFVNEVLFEYHFNRVDFVTEPGEFSVR
GGIIDVFSFSNDEPYRIEFFGNEVDSIRTFDVETQLSNDKLKKINIMPNVENKSLQENRE
SFLKYISPKTVIFTKNVDEIGIKLDKFFAKAENAFHELSTEIKHAKPAELFCNGEVIKAQ
IQDFTSIRIALRSALKDQNTEEVLFHIKPQPSFNKQFHLLIENLNEYKEKGFTNYILCGN
EKQAQRFHDIFDDAAVAVHYETIVFPLYQGFIDEEQKIVCYTDHQIFERYHKFRLKNGYA
KKQTITLKELTNLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGDRDILYVSIH
SLHKISKFNGKDGKPPKIYKLGSDAWKKVKQKTKARVKHIAFNLIQLYAKRKLQRGYAFG
QDTHIQHELEASFIYEDTPDQFSATQEVKKDMEKEQPMDRLVCGDVGFGKTEVAIRAAFK
AVDNGKQVAVLVPTTILAFQHFKTFSERLKEFPVRIDYVNRFRSAKQKNRVIEGIADGSV
DIVIGTHQLTNKRINFKDLGLLIIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQ
FSLMAARDLSVIKTPPPNRHPVETNVIRLSEEIMRDAISYEIARGGQVFFIHNRIENIKE
VAGMLQRLVPDAKIGIGHGQMEGKKLEDLMLGFMNNEFDVLVSTTIIESGLDVPNANTIF
INNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRITALELFSELGSGLN
IAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIVELKENEFKDLYPTDENTPKE
FVKEVQIDTDFEILFPDDYINAVTERLSLYNKLGILTSEEELQTFESEIIDRFGEYPTQV
TDLLDSVRIKWLAKELGLEKVILKQKRMIGYFVADQQSDFYQTAAFSRILQYVQRNPKSC
VMKEKKTKNGLRLLITFIKIDSVRTALKTLQKI
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacaaactattgtaaaccaataccaaaaatctgcaaaaataaaacagatttta
tcaaagttacagcaggagcaaacccattttcaaataacaaacttagtaggttcttcgttg
tcctttgttatttcagaaacttttaaaaaagtagaaaggccttacttattaatctttaaa
gataaagaagaagcagcttattacttaaatgatttagaacagttattgggcgataaaaac
gtgctgttttatccaggatcttacagaagaccctatcaaatagaagaaacagataatgca
aatgtattgttgcgttctgaagttttaaacagaataaattcgcgtaaaaaaccagcagta
attgtaacctatccaacagcactatttgaaaaagtagttactaaaaaagaattagaaaaa
aatacattaaaagttaacgtaggtgaaaacttatcacttgatttcgtaaacgaagtttta
tttgaatatcattttaatcgcgtagattttgtaacagaaccaggtgagttttcagtaaga
ggaggtattattgatgtattttctttttccaatgatgaaccatatcgaattgaattcttt
ggaaatgaagtagatagtattagaacatttgatgtagaaacacaactatctaatgacaag
cttaaaaaaataaatataatgcccaatgtagagaataaatctctacaagaaaatagagaa
agtttcttaaaatatatttctcctaaaacagttatttttacgaagaatgttgatgaaata
ggaattaaattagacaagttttttgccaaggcagaaaatgcatttcatgaattatccaca
gaaataaaacatgcaaagcccgcagaattattttgtaatggagaagttatcaaagcacaa
attcaagattttacctctataagaatagcacttcgatcagcacttaaagatcaaaataca
gaagaagtattatttcatataaaaccacagccctctttcaataagcagtttcatttacta
atagaaaacttaaacgaatacaaagaaaaaggatttacaaattatatactatgcggaaac
gaaaaacaagcgcaacgttttcatgatatttttgatgatgcagcagtagcagtacattat
gaaacaattgtttttcctttatatcaaggattcattgatgaagaacaaaaaatagtttgt
tatacagatcatcagatatttgaacgttaccataaatttcgtttaaaaaatggatatgcc
aaaaagcaaacaattactttaaaagaacttacaaatcttgaaataggtgactatgtaact
catatagaccacgggatagggaaatttggaggcttacaaaagatagatgtagaaggaaag
aaacaagaagctataaaactaatttatggagatcgtgatattctgtatgtaagtatccac
tcattacataaaatatcaaaatttaatggaaaagatggaaaaccaccaaaaatatacaag
ctaggatctgatgcttggaagaaagtaaaacaaaaaacaaaagcaagggtcaaacatata
gcgtttaatcttattcaattatatgcaaaaagaaagctacaaagaggatatgcttttgga
caagacacacatatacaacatgaattagaagcaagctttatttatgaagatactccagat
caattttctgctacgcaagaagtaaaaaaagatatggaaaaagaacagccaatggaccgc
ttagtatgtggagacgttggttttggtaagacagaagtagccattcgtgcagcattcaaa
gcagtagataacggaaaacaagttgcagttttagtaccaacaactattttggcctttcag
cattttaaaacgttttcagagcgtttaaaagagtttcctgtacgaatagattatgtaaac
aggtttaggtctgcaaagcaaaaaaacagggttatagaaggaattgctgacggaagtgta
gatattgttataggaacccatcaattaaccaataaacgtattaattttaaagatttaggg
ctcttaattattgatgaagagcaaaagtttggagtagccgttaaagataagttgaaaact
ataaaagaaaacgttgatacccttaccttaacagcaacaccaataccaagaacattgcaa
tttagtttaatggcagcacgtgatttatcggttattaaaacaccaccacccaatcgtcat
cctgttgaaacaaatgtaattcgattaagtgaagaaattatgagagatgccatttcgtat
gaaatagctcgcggaggtcaagttttttttatccacaatcgtattgaaaatatcaaagaa
gtagcaggcatgttgcaacgcttagttccagacgctaaaataggaataggacacgggcaa
atggaaggcaaaaaactagaagatttaatgctaggttttatgaataatgaatttgatgta
ttggtatctactaccattattgaaagcggattagacgtgcctaatgccaatactattttt
attaataatgccaataattttggcttgtcagatttacatcaaatgcgtggtcgtgttgga
cgctccaataaaaaggccttttgttactttataaccccaccttaccatatgatgaccgat
gatgcccgtaagcgcattacagcattagaactgttttctgaattaggtagtggtttaaat
atagccatgaaagatttagaaattcgtggtgcaggagatttattaggaggtgagcaaagt
ggttttattaatgatattggttttgacacctatcagaaaatattacaagaagctattgta
gagcttaaagaaaatgagtttaaagacctctaccctacggatgaaaatacaccgaaagag
tttgtaaaagaagtacaaatagataccgattttgaaattttatttccagatgattatatc
aacgcggtaacagaacgattaagtctttataacaagttaggaatattaacctcagaagaa
gaactacaaacttttgaaagcgaaatcatagatagatttggagaatatccaacacaggta
acagatttgttagatagtgttcgtataaaatggcttgcaaaagaattaggcttagaaaaa
gttattttaaagcaaaaaagaatgattggttattttgtagccgatcaacaaagtgatttt
taccaaacagcagctttttcaagaatactacaatatgtacaaagaaaccccaaaagttgt
gttatgaaagaaaagaaaactaaaaatggcttacgattattaattacatttattaaaata
gattcagtacgtacagccttaaaaacactgcaaaaaatataa
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