Thalassovita mediterranea: KUV46_12140
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Entry
KUV46_12140 CDS
T07443
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tmd
Thalassovita mediterranea
Pathway
tmd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KUV46_12140 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmd03400
]
KUV46_12140 (ligD)
Enzymes [BR:
tmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KUV46_12140 (ligD)
DNA repair and recombination proteins [BR:
tmd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KUV46_12140 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QYJ00084
LinkDB
All DBs
Position
2469615..2472104
Genome browser
AA seq
829 aa
AA seq
DB search
MAKADADTLKTYREKRDFTRTPEPDGSKSKRSRSKNGALSFVIQKHDASRLHYDFRLELD
GVLKSWAVTKGPSLNPSDKRLAVRTEDHPLDYGSFEGVIPDGYGAGTVMLWDQGEWEPRE
DPHEGLKKGSLKFNLKGERLKGGWALVLMKNNSTRDKQNWLLIKEKDDEADRKSDPRKTW
QTSVTSDRDFEEIEEAAAGGDADILGEDEAPDFPGFVEPQLAKLRDDPPSGDEWLHELKF
DGYRIQALIAGHQVRLITRNGKDWTDRYPAVAKALAALEVETAAIDGELVALDERGHSHF
ASLQAATKGEAEATLAFYAFDLLSRDGKDLRKKPLTERKAALREIIPADSEIVRFSDHIE
GKGDDVIGKACGMGLEGIISKKAASKYVSGRGSGWIKSKCVGRDEFVIGGYRKSDKKARP
FASLLLGEFEDGKLHYRGRVGTGFDEATMDELSAAMTRLERKTSAFQGLPADARRGAVWL
TPKLVAEIAYTERTPDGLLRHPSFQGLREDKEAKQVKTRREKETETVEDADNGTVLSVRI
SHPDRVVYEEQGATKREIAEYLAEIAPRMLPHIKGHPVSLVRCPSGAGGKCFYQKHHTDS
VPDAIDEVEIEEKDGETSGYLVLNSAEALVSAAQIGALELHIWGSRTDRLDRPDRLVLDL
DPDEGLDFEDVKSAAFEVRDVLDAAGLQTFALLTGGKGIHVIAPLERRQGWDEVKSAARG
LARKLSEADPDRYVAEMSKAKRKGRIFVDWLRNERGATAVCPYSLRARPGAPIATPVRWD
ELSGISSGHDYTLSTIRRRLSALKSDPWEGYDTVRQSISKSVLDVLAGD
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagctgacgcggataccttgaagacctatcgggaaaagcgtgacttcacgcgc
acgccggaacctgatggctcaaaatcaaagcgctccagatcgaagaatggcgcgctcagt
ttcgtcatccagaaacatgatgcgagccggcttcattacgatttccggcttgagcttgat
ggtgttctgaaaagctgggcggtcacgaaagggccgagcctcaacccgtcagacaagcgt
ctggccgtgcggactgaggaccacccgctcgactatggcagctttgaaggtgtgatcccc
gatggctatggcgcgggcacggtcatgttgtgggaccagggggaatgggaaccccgcgaa
gacccccatgaaggtctcaagaaagggtcgctcaagttcaatctcaaaggtgagcggtta
aagggcggctgggcgctcgtcctgatgaaaaacaattccaccagggacaagcagaactgg
ctcctcatcaaggaaaaggatgacgaggccgatcgcaagtccgacccacgaaagacctgg
cagaccagcgtgacgagtgaccgtgatttcgaagagatcgaagaggcggctgccggcggt
gatgccgacatactgggagaagacgaggcccccgactttcctggttttgtcgagccgcag
cttgccaaactccgcgatgatccgccctcaggtgatgaatggctgcatgagctcaaattt
gatggctatcgcattcaggcactgatcgcaggccatcaggttcggctgatcacgcgcaat
ggcaaggactggacggatcgctatcccgccgtcgcgaaagcacttgcggcgcttgaggta
gagactgcggccatcgacggagagctggttgccctggatgaacgtgggcacagccacttt
gcttcacttcaggcagctacaaagggcgaggcggaggccacgctggccttctacgcgttc
gatctgctttcgcgagatggcaaggatttacgcaagaagccgcttacagagcgcaaagct
gcgttacgcgaaatcattcccgccgatagcgaaatcgtgcgcttctccgaccatatcgag
ggcaaaggtgacgacgtcatcggcaaggcctgcgggatgggtctggaaggtatcatctcc
aaaaaggcagcatcgaaatatgtgtctgggcgcggatcgggctggatcaagtcaaaatgc
gttggccgcgacgagttcgtgatcggcggctatcgcaagtcagacaagaaggcgcggccg
ttcgcgtcgcttctgcttggtgaatttgaagacggcaaactccactaccgcggccgcgtc
ggtaccggatttgacgaagcgacgatggatgagctgtcggcggcgatgaccaggctggag
cgcaagacgagcgcttttcagggcctgccagccgacgccaggcgcggtgctgtctggctg
acgccgaagctcgtagccgagatcgcctatacagagcgcacgcccgacggcctgctacgc
cacccgagctttcaggggctgcgggaggacaaggaggcaaagcaagtgaagacgcgccgc
gaaaaggaaacggagacagtcgaagacgccgataatggaacggtacttagcgtacgtatc
agtcatccggaccgtgtcgtctatgaggagcagggtgctaccaagcgcgagattgccgaa
tacctggccgagatcgcgccgcgcatgctgcctcacatcaagggccatcccgtcagcttg
gtccgctgtccgtctggggcaggcggcaagtgcttctaccagaagcaccacaccgactcc
gtccctgatgcgattgatgaagtggaaatagaggagaaagacggggagacatctggctac
cttgtactgaattcggctgaagcgctggtttcagcagcgcagattggcgcccttgagctc
cacatctggggttcgcgcactgaccggctggatcgtccagaccgtctcgtacttgatctc
gacccggatgaagggctggattttgaagacgtgaaaagcgcagcctttgaagtgcgcgac
gtgcttgatgcggcagggctccagacctttgcgctgctgacaggaggcaaaggtattcat
gtgattgccccattggagcgcaggcaaggctgggatgaagtgaaatccgccgcccgaggg
cttgcgaggaagctctctgaagccgatccggaccgttatgtcgccgagatgtccaaagcc
aagcgcaagggacgcatattcgtcgactggcttcgcaatgaacgcggcgccaccgcggtc
tgtccctattcgctccgcgcaagaccgggtgcgccgattgcgacccctgtacgctgggat
gagttgtccggcatcagctccggccacgactataccctttcgacgatccggcgccggctg
tcagcgctgaaatcagacccctgggaagggtatgacacagtccgccaatctatctcaaaa
agcgtgctggacgtactggctggcgactag
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