Thermosipho melanesiensis: Tmel_1855
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Entry
Tmel_1855 CDS
T00550
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tmel_1855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tme03400
]
Tmel_1855
Enzymes [BR:
tme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tmel_1855
DNA repair and recombination proteins [BR:
tme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tmel_1855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
SecA_DEAD
ERCC3_RAD25_C
DUF643
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABR31690
UniProt:
A6LP39
LinkDB
All DBs
Position
1839275..1841980
Genome browser
AA seq
901 aa
AA seq
DB search
MNKILILPNEKDCNIEGYLYIPSYDVFPFEKINNSWFVRSQRIYALYLALKNNLKATATL
YSITRYVMPPDILKKHIFELKIGDKITSPEVLFSNLGYERVFNVTDGGQFSTRGDIIDFL
GPNQIPTRIELFDNIIEDIRTFDIATQKSIKKLEYAIILPAKEYIEPVLHETILGEKYKG
TFLDYNITFEVVNKEKVIEEYIKKEREIRELIIDPQLRKKYINFSGIDYNKILEVSKEKI
LENTKKRKEKASDEINSIPVISQEDFQIGDYVVHKEYGIAKFSGITKITQKNLEREFLIL
QFKDSKLFVPTDRLDLVQKYIGASETVKLDNLRKSNWIRKVNKAKKEIQNTVKELLRLNA
LRKMTKGLPLPGDPELEKEFANTFPHIETEDQLKAIEEVSEDLSADKNMDRLIAGDAGYG
KTEVAMRAAFKTVVSGKQVALLVPTTVLARQHFENFQKRFKKFGIKVELYDNSLTPKQKE
NVKENVKKGITDIVIGTHGIIASMKFSDLGLLIIDEEQKFGVHQKESFKKIRVNINILSM
SATPIPRTLHMALSGIKDMSILKTPPIGRKNIQVFVSKFDERIARQAILREVNRGGQVLY
VHNRVNTIKDVADNLKKIVPEVKIEIAHGQMSKRKMEKIIKEFYDGNLDVLVSTSIIENG
IDIPNANTLIVDDSHRYGLSQLYQLRGRVGRSEKRAFAYFFHPSKINKTAQERLKAIKEI
MGPGSGLQIALKDMEIRGIGNILGLEQHGFINDIGLNYYLEILNEVLSNLEGKIEPKINT
ELIGMKGSIVIPENYVSDPVERLRLYRRISSLSTEKEVDEILNELEDRFGTPPESVINLL
KYTKLRILSSKMGISKVIFNENSIILYSKNNLNLNIPHIYNEKEKAYVIFLSEEEFIEFL
K
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaatattaattcttccaaatgaaaaagattgcaacatagaaggatacttatat
attccttcatatgatgttttcccattcgaaaaaataaataattcgtggtttgttcgttca
caacgaatatatgcattgtacttagctttaaaaaataatttgaaagccacagctacttta
tattcaataactagatatgtaatgcctccagatatattaaaaaaacacatcttcgaattg
aaaattggtgataaaataacatcacctgaagttttgttttcaaatcttggttatgaacga
gtatttaatgtaacagacggtggacaattttccactagaggagatataatagatttcctt
ggcccaaatcaaataccaactagaattgaactctttgacaatatcattgaagatataaga
acattcgatattgcaacacaaaaaagtatcaaaaaattggaatatgcaattattttgccg
gccaaagaatatattgaacctgttttacacgaaacaatattgggagagaaatacaaaggt
acatttttagattacaacattacatttgaggtagtaaataaagaaaaggtaatagaagaa
tatataaaaaaagagagagaaataagggaattaataattgatcctcaattgagaaaaaaa
tatataaatttttctggtattgattataacaagattttagaagtttcaaaagaaaagata
ttagaaaatactaagaaaagaaaagaaaaagcatcagatgagataaactcaattccagta
attagtcaagaagattttcaaattggcgattatgtagtacataaagaatatggtattgca
aaattttctggaataactaaaattactcaaaaaaatcttgaaagagagtttttaattcta
caattcaaagattcaaagctttttgtaccaactgataggttagaccttgttcaaaaatat
ataggcgcaagtgaaacagttaaactagataacttaagaaaaagtaattggattaggaaa
gtaaataaagcaaagaaagaaatacaaaatactgtaaaagaacttttaagattaaacgca
ctaagaaaaatgacaaaaggtttaccacttcctggagatccagaacttgaaaaagaattt
gccaatacatttccacatatagaaacagaagatcaactaaaagccatcgaagaagttagt
gaagacctttcagccgataaaaatatggatagacttatagcaggtgatgctggttatgga
aaaacagaagttgcaatgagagcggcattcaaaaccgtagtctctggaaaacaagttgca
ttactcgttcccacaacagttttggcaagacaacactttgaaaactttcaaaaaagattt
aaaaagtttggaattaaagttgaattatacgacaactcccttacaccaaaacaaaaagaa
aatgtaaaagaaaatgtaaaaaaaggaataacggacattgtaataggaactcacggaatc
atagcatcaatgaaattttcagatctagggttattaattatagatgaagaacaaaagttt
ggcgtacaccaaaaagaatcgtttaaaaaaattagagtaaatattaacatactttcaatg
agtgcaaccccaattccaagaacactacatatggcacttagtgggattaaagatatgtca
attttaaaaactcctccaattggtagaaaaaacatacaagtttttgttagtaaatttgac
gaaagaattgcaagacaagccattctaagagaagtaaataggggaggacaagttctttat
gtacacaatagggtaaatactattaaagatgttgcagataatcttaaaaaaatagtacca
gaagtaaaaattgaaatagctcacggccaaatgtctaaaagaaaaatggaaaagattata
aaagaattctacgatggaaaccttgatgtactagtttcaacttcgataattgaaaacggc
attgatattccaaatgcaaatacactaattgtagatgattcacatagatacggattatca
caactttatcaacttaggggtagagtgggtagaagtgagaaaagagcattcgcatatttt
ttccatccatcaaaaataaataaaactgcacaagaaaggcttaaagcaataaaagaaata
atgggaccgggcagtggactacaaattgctttaaaagatatggaaattaggggaattggt
aatatacttggactagagcaacatgggtttataaacgacatagggcttaattattatcta
gaaatattaaacgaagttctatccaacttagaaggtaaaattgaaccaaaaataaacact
gaattaatcggaatgaaaggttcaatagtaattccagaaaattatgttagtgatcctgtt
gaaaggttaagactatacagaagaatatcctcgctttcaaccgaaaaagaagttgatgaa
atactaaatgaacttgaagataggtttggaactcctccagaaagtgttattaatctccta
aaatatacaaaattaaggattttatcatcaaaaatgggaatttcaaaagttattttcaac
gaaaactcaataatattatattcaaaaaacaaccttaatctaaatatccctcatatttac
aatgaaaaagaaaaagcatatgtaatttttcttagtgaagaagaatttattgagtttcta
aaatag
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