Thermocaproicibacter melissae: NOG13_08010
Help
Entry
NOG13_08010 CDS
T09029
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmel
Thermocaproicibacter melissae
Pathway
tmel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NOG13_08010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmel03400
]
NOG13_08010 (mfd)
Enzymes [BR:
tmel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NOG13_08010 (mfd)
DNA repair and recombination proteins [BR:
tmel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NOG13_08010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
UB2H
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WBY63898
LinkDB
All DBs
Position
1639288..1642773
Genome browser
AA seq
1161 aa
AA seq
DB search
MEFLNSAIGGLKEFAALESAVRSRSLPAAVTGVTGIHKANIIYSLCSRLGRRAFVVTSDE
PEANRLCSDLEAMGIPAYFYPYRVFTLREAEGVSHEYEHQRLRALAAMLEEAPSVVVCCA
DAALQLTIPPEELKRRMLTLKVGMQVSMERVLSVLTACGYEAAPQIDGPGQYSRRGGILD
FFPTGMSAPVRAEFFGDEIDTLSLFDVETQRRTESQESVTVFPASEAIIGDAGFLAEQIR
SIAASLRGKTAAQAKKVLSHEASKLEDGLPLGNADKFLPILYGGKTACVLDYLTDDILLF
VSEPVRAKERARSALWQWGEDLKDCLADGSLCRGLDCYNREWTDALSVFAEHGAIYLDAF
VHGGYETPVHEALNLTARQLSVWGGNMQLLIEDLRNMLTNKWSCAVLAGNEKAAKNVASD
LQRHGIDAVYQENPKKIERGEVVVTTGALSSGFEYPGAFFGLITRGRTAPVKTKRAKKVH
TGQEITDISDLTPGDYVVHATHGIGVFEGIHKIEMQGIVKDYIKVRYAKGDTLYVPVTQL
DMVSKYIGPREDAAVRLNRIGGTDWQKAKARVRSAVKDIAKDLIKLYAERMALKGHAFPP
DTEWQHDFESHFEFEETEDQLRCIEEIKSDMERPVPMDRLLCGDVGFGKTEVALRAAFKC
ISDGKQCAMLVPTTILAWQHYQTITRRMEGFPVNIQLLSRFRTPKQQEEIIKGLKRGDVD
MVVGTHRLISQDVEFRDLGLIIIDEEQRFGVAQKEKLKTKYKTVDVLTLSATPIPRTLNM
ALSGIRDMSIIEEAPRDRHPVQTYVLEHDDNIIYEAIRRELRRGGQVYYLHNDVATIERT
AARIQAAIPEAKVGFGHGKMSEQELSEVWRRLIEQEIDVLVCTTIIETGVDVPNVNTLII
ENADRMGLSQLHQIRGRVGRSNRRAYAYLTFRRNKVLSEAAQKRLTAIRQFTEFGSGFKI
AMRDMEIRGAGNILGGEQHGHMEAVGYDMYLHLLSDAIRREKGEEVQEYGEECLVDLQVP
AHIPEDYIPDLNQRLDIYRRIADIRTSEDALDVTDELIDRFGEPPASVNGLVQIALLRNR
ASALGIKEIKQQGDKLLLYRDSFDMKKISALIAAMRGRVMVNAGTKPYISVTVPKGQEPV
AVLEKTLSILGGDFDEKSQKE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggaatttctcaacagcgcaatcggcggattaaaagaattcgccgcgctggaatcggcg
gtgcgctcccgaagccttccggctgcggtcacgggcgtgaccggcatccacaaagcaaat
atcatatattcgctctgctcccgtctggggcgcagagcttttgtcgtaacgagcgatgag
ccagaggcgaaccgcctctgctccgacctcgaggcgatggggattcctgcctatttttac
ccctaccgcgtttttaccttgcgtgaagcggaaggcgtttcccatgaatatgagcaccag
cgcctgcgtgccctcgccgccatgctggaggaagcgcccagcgtggtcgtctgctgtgcc
gacgcggcgctgcagctaaccattcctcccgaggaactgaagcggagaatgctcacgctg
aaagtcggcatgcaggtttccatggaacgcgtgctgtccgtgctcaccgcatgcggctac
gaggcggcgccgcaaatcgacgggccaggccagtattcccgacgcggcggaattctcgac
tttttcccaaccggaatgtcggctccggtgcgcgctgaatttttcggcgatgaaatcgac
acactctctctgtttgatgtagagacacagcggcgcaccgagtcgcaggaaagcgtaacc
gtcttccccgcctccgaggcgattatcggcgacgcggggttccttgcggaacagattcgt
tcgattgccgcctctctgcgcggcaaaaccgcggcgcaggcaaaaaaggtcctctcgcac
gaagcgagcaagctcgaagacggtttgccgctcggcaatgccgacaagtttcttcccatt
ctttacggcggaaaaaccgcctgcgtactcgactacctcacagatgacatcctgctgttt
gtcagtgaaccggtgcgtgccaaagagcgtgcgcgcagcgcgctgtggcagtggggcgaa
gacctaaaagactgccttgccgacggttctctctgccgcgggctggactgctacaaccgg
gagtggaccgacgcgctgtctgtctttgcggagcacggcgccatctaccttgacgctttt
gttcacggaggatacgaaacgcctgttcacgaagcgctgaacctcaccgcacgacagctt
tccgtttggggcggaaacatgcagcttctcatcgaagacctgcggaatatgctcacgaac
aagtggtcctgcgctgtcctcgccggcaatgaaaaggctgcgaagaatgtggcttccgac
ctccagcgtcacggcatcgacgcggtctaccaagagaacccgaagaaaatcgaacgcgga
gaagttgttgtaacaacgggagcactttccagcggatttgaatacccgggcgcgttcttc
ggcctcatcacgcgcggacggacagcccccgtgaaaacaaagcgtgccaaaaaagttcac
accggtcaggaaatcaccgatatttccgacctcaccccgggcgattacgtcgttcacgct
acacacggcatcggcgtgtttgaaggtatccacaagattgaaatgcagggaattgtaaag
gactatatcaaggtgcgctatgcgaagggcgacacgctttatgtccctgtgacacagctc
gacatggtctccaaatatatcgggccgcgcgaagacgcagcggtgcgcctcaaccgcatc
ggcggaaccgactggcagaaggcaaaggctcgcgtgcgcagcgcggtcaaggacattgca
aaggatctcatcaaactctacgccgagcgcatggcgttgaaaggccacgccttccctccg
gacaccgaatggcagcatgactttgagtctcactttgagtttgaagaaaccgaggaccag
ctccgctgtatcgaggaaatcaagagcgacatggagcgcccggttcccatggatcgcctt
ctttgcggcgacgtcggcttcggcaaaacggaagtcgccctgcgcgccgcgttcaaatgt
atttccgacggcaaacaatgcgccatgctggtgccgacaacgattctcgcttggcagcac
taccagaccatcacccgccgcatggagggtttccccgtcaacattcagcttctttcccgc
ttccgaaccccgaagcagcaggaagaaatcatcaaaggcctcaagcgcggcgatgtggac
atggtcgtcggcacgcaccggctcatttcacaggatgtggaattccgcgacctcggcctc
atcattatcgacgaggaacagcggttcggtgtggcgcagaaggaaaagctcaagaccaaa
tacaaaaccgtagacgttctgaccctttccgcaacgccgattccgcgcacattgaacatg
gcgctctccggaatccgcgacatgagcatcatcgaagaagcgccgcgtgaccgccacccg
gttcagacctatgtcctcgagcatgacgacaacatcatctacgaagcgattcgccgggaa
ctgcgccgaggcgggcaggtttattatctgcacaacgacgttgccaccattgagcgcacg
gctgcccgcattcaggccgcgataccagaagcaaaggtcggcttcgggcacggcaaaatg
agcgagcaggagctttcggaggtctggcggcgtctgattgaacaggaaatcgacgttctc
gtctgcaccacaatcatcgaaaccggcgttgacgttccgaacgtcaacacgctgattatt
gaaaatgccgaccgcatggggctttcgcagcttcatcagattcgcgggcgcgtagggcgc
tccaaccgccgtgcgtacgcttacctaaccttccggcgcaacaaggtgctttctgaagcc
gcacagaaacgcctgaccgccatccgccaattcacggaattcggctccggcttcaagatt
gccatgcgggacatggaaatccgcggcgcaggcaacattctcggcggagaacagcacggc
cacatggaggcggtcggctacgatatgtacctgcatctgctttccgacgcgattcggcgt
gaaaaaggcgaggaagttcaggaatacggcgaagaatgtctcgtggaccttcaggtgccg
gcgcatattccggaggactatattccggacctgaaccagcggcttgacatttaccgccgc
attgcggacatccgaacctcggaggacgccctcgacgtaaccgacgaactgatcgaccgg
ttcggcgagccgccggcaagcgtgaacggccttgtgcagattgcgctgctgcgcaaccgc
gcctccgccctcggcatcaaggaaatcaagcagcagggcgacaagctgcttctctaccgc
gacagtttcgatatgaaaaagatttcggccctcatcgctgccatgcgcggccgcgttatg
gtaaatgcgggaacgaagccttacatcagcgtaacggttcccaaaggccaagaacccgtt
gctgtgcttgagaaaacactctccatccttggaggagatttcgatgaaaaatctcaaaag
gaatag
DBGET
integrated database retrieval system
