Talaromyces marneffei: EYB26_002920
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Entry
EYB26_002920 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03013
Nucleocytoplasmic transport
tmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EYB26_002920
03015 mRNA surveillance pathway
EYB26_002920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_002920
Enzymes [BR:
tmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
EYB26_002920
5.6.2.5 RNA 5'-3' helicase
EYB26_002920
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
EYB26_002920
mRNA cycle factors
Common to processing body (P body) and stress granule
EYB26_002920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
Helicase_RecD
PIF1
nSTAND3
AAA_16
AAA_22
ATPase
AAA_10
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
79162893
NCBI-ProteinID:
XP_054118199
LinkDB
All DBs
Position
2:complement(join(1562143..1565155,1565210..1565478))
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AA seq
1093 aa
AA seq
DB search
MDAFTNIGNHMVSDSASAINADDGYSTVDPDESLLSLAGGARRRRHDDEDDGSDAFDDDE
LESLASVPVGGRLQKQKYEEEKELPPHACAYCGIHNPSSVVKCLSCSKWFCSARGNTSSS
HIVNHLVRARHKEVQLHPSSSLGDTILECYNCGTKNAFLLGFIPAKSDTVVVLLCRQPCA
AMPSSKDMNWDTSRWQPLIEDRSFLPWLVATPSDQEQLRARHLSPQMIAKLEEMWKDNST
ATIADLEKANSVDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKESQSQDGLVVRW
DLGLNNKHLASFVLPKLELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIKIPNNQSDEVT
IELRAKGDHKSVPTECTHNFTADYVWKATSFDRMQYAMKTFAVDEMSVSGYLFHRLLGHE
VAAAPMKTQMPKKFSVPGLPELNGSQINAVKSVLQKPLSLIQGPPGTGKTVTSATIIYHL
AKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVRVTAKSREDVESPVRFLSLHEQVRMND
SNIELNKLNQLKSELGELSSQDEKKFKQLTRAAEREILTNADVICCTCVGAGDPRLAKFK
FRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLV
ILGCSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVSMAQRLRRDVDFPWPVAENPMMFW
SNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVQPSGIGIITPYEGQRSYVVSSMQA
TGTFKKEHYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYG
VVILGNPKVLSKHPLWNYLLLHFKERKCLVEGPLSNLQESLVQFSRPKQAYRGPQRFHMA
YNHASSMASGMSNGRNGNRPEYHDTGSVVGYIPDDVSSVHSSAIGGVGVPSGYPPMFQNF
AEAWPSLQGGRRANGARNKGAPSVAGESVAATESDMTSSVIDGKGGQGGVSLAGLSINDM
TKQPSLSQSDRLKRYVESGGRDSYKSGVNDSGSIFGGSSASIRVPRGPGHAQDDDDARSV
STAFASQIGGNYD
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgtttacgaacataggaaaccatatggtctccgactccgcctcggccatcaat
gcagacgatggctattctacagtcgatccagatgagagtcttctaagcctggcaggtggt
gcccgacgtaggagacacgatgatgaggacgatggttcagatgcttttgatgatgacgaa
ctggagagtcttgcaagtgttccagttgggggtcgtcttcaaaagcagaagtatgaagaa
gaaaaggagctcccaccccatgcctgcgcgtattgtggtatacataacccaagtagtgtc
gttaaatgtctctcctgcagtaaatggttctgtagtgcgcgtggcaacacttcctcctcg
catattgtgaaccatttggtgcgtgcacgacacaaggaagtccagcttcacccaagctct
tctcttggcgacacgattcttgagtgctataactgtggaacaaagaatgccttccttctt
ggtttcattcctgccaaatctgacacggtcgtcgtcctcctctgccgccaaccatgtgcc
gccatgccatcctcgaaagacatgaattgggatacgtcgcgctggcagcccctcatcgag
gatcgatctttcttgccatggcttgtagcgacaccttcagaccaagagcaactccgagcc
cgtcacttgagtccacaaatgattgcaaaattggaggaaatgtggaaagacaactcaacc
gccactatcgccgatctcgaaaaagctaacagtgttgacgacgagcctgctccggtttta
ctgcgatacgacgatgcataccaatatcagaatgtttttggtcctttggtcaagatagag
gccgattacgatcgcaagttgaaggaatcacagtctcaagatgggttggtcgttcgatgg
gacctcggccttaacaacaaacatctcgccagttttgttctccccaagcttgaactaggt
gatgtgaaattagctgtcggggatgaaatgcgcctcaagtatactggagaattacgtcct
aaatgggaaggggttggttatgttatcaagatccccaacaatcagtccgatgaagtcaca
atcgaattgcgcgctaaaggcgatcacaagtcagttcctacggaatgcacacacaatttc
actgcagactatgtctggaaggccacctcatttgatcgtatgcagtacgctatgaagact
tttgctgtggacgaaatgagtgtttcgggttaccttttccatcgccttctaggtcacgaa
gtcgccgcagcgccaatgaagactcagatgccgaagaaattcagcgtacctggccttcct
gaattgaacggtagtcagatcaatgcagtaaaaagtgttttgcagaagccgctcagtttg
attcaaggtcctccgggaacgggaaagacggtcacatcagctacaatcatctatcatctt
gccaagatcaacggtggtcaagttctcgtctgcgctccgtccaacgttgctgtcgaccag
ctctgtgaaagaatccaccgcactggattgaagactgtccgtgtaactgccaagtctcgc
gaggatgtggaatcgcctgttcgatttctgtcattgcacgaacaagtccgaatgaacgat
agtaacattgaactcaacaaacttaatcagttgaagtcagagttgggtgaactttccagc
caagatgagaagaagttcaagcaactcacccgcgctgccgagcgagaaatcctcacaaat
gctgatgtaatatgttgtacttgtgttggtgctggagatccacgacttgcaaagttcaag
ttccgaacagtcctcattgacgaatctactcaatctgcagagcccgagtgtatgattcct
cttgtattgggctgcaagcaggtcgtacttgttggtgatcatcaacaattaggacctgtc
atcatgaacaagaaagctgccaaggctggtctgaatcaatcactcttcgagcgtcttgtt
atccttggctgctctccgatccgattgaatgttcagtatcgtatgcatccgtgcttatca
gagtttccgtccaacatgttctacgaaggatctctacaaaacggtgtctctatggcccaa
cgacttcgtcgtgatgtcgattttccttggcccgtggcagagaaccccatgatgttctgg
tccaaccttggtaacgaagaaatctctgcttccggaacttcttacctcaatcgtacagag
gctgcaaatgtggagaagattgtgactcgatttttcaaggctggagttcagccctcgggc
attggtatcatcactccttatgaaggccaacgcagctacgtggtttcttccatgcaagct
actggtaccttcaagaaagagcactacaaggaaatcgaggttgcatcagtcgatgcgttc
cagggccgagagaaggacttcatcgttctctcttgcgtgcgatctaacgaccatcaaggt
atcggtttcttgagcgaccctcgtcgtctcaatgtcgcccttacgcgtgctaagtacgga
gtggttatcctaggcaatccaaaggtcttgtccaagcaccccctatggaactaccttctt
ctacacttcaaggaacggaaatgtttggttgagggaccattgtcaaatcttcaggagtcg
cttgtccagttcagccgccccaagcaggcgtaccgtgggccacagagattccacatggcc
tacaaccatgcatcgagtatggcaagtggaatgtctaacggaagaaatgggaaccgcccc
gaatatcatgacacgggctctgtggttggatatattccagatgatgtgtcctccgtacac
tcctcagccatcggcggtgtcggtgtcccgtctggatatccgccaatgttccaaaatttc
gcagaagcgtggccgtctcttcaaggaggtcgtcgagctaatggcgctcgcaacaagggt
gccccaagtgtcgctggcgaatcagttgctgctacggaatccgatatgacgagcagtgtg
attgacggtaaaggtggccaaggtggagtcagtctggctggtttgagtatcaacgatatg
acaaaacagcctagtctcagtcaatcagacagactcaaacgttacgtcgagtcagggggt
cgtgatagctacaaatccggagtcaacgatagtggcagcattttcggtggcagctcggct
agcattcgcgtgcctcgtgggcctggccacgctcaggacgacgatgacgctcgcagtgtc
tcgacggcatttgccagtcaaattggtggcaactacgattga
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integrated database retrieval system
