Temperatibacter marinus: QGN29_13105
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Entry
QGN29_13105 CDS
T09370
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmk
Temperatibacter marinus
Pathway
tmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QGN29_13105 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmk03400
]
QGN29_13105 (mfd)
Enzymes [BR:
tmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QGN29_13105 (mfd)
DNA repair and recombination proteins [BR:
tmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QGN29_13105 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
Helicase_C
DEAD
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WND02485
UniProt:
A0AA52EGR3
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All DBs
Position
2891899..2895414
Genome browser
AA seq
1171 aa
AA seq
DB search
MSLTQLYLEDRFSYTLAGVAPGYDSLLLGQFAHEKYTKDKGLHLHLCADDNHLWELKETL
SFFAPEVKILVFPAWDCLPYDRVSPHNDVSAQRLKCLSDLALYKLTSPTIVLATVNAASQ
RVPAADFIKNSSLVIELGSELSMNHVANFLSYHGYNRSSQVAEAGEFAVRGGLIDLYPSG
YSQPIRIDFFGDEIDSIRTFDPLDQRTTGKVKRLRLTPVGEYALDEESIKRFRRNYVNSF
GPSKNDALYESISEGIKHKGAEHWLPLFHDNLETLFDYIGDATLSLAAQVDEVASERFDA
IQDYYQARVEAKEIAAKDKKSNLPLYHPIQPQALYIQNEEWEECLERFSPLRLSVFKEPE
SPSVRAIDVVKGRDFAAERNSKDINVYDALKEHVDTLIELKKRVVFACYSAGSADRMEGV
LRDHGIGPTGIAETWEDIRTSNKKLIALAVLPLSNGFESEDLAVITEQDVLGDRLIRKSK
RQKKADNFLTEASGLSAGDYVVHSQHGIGQFDGLETVKVSGAAHDCLRLVYAGGDKLFVP
VENIEMLSRYGSEETSPQLDKLGGVAWQARKARMTKKVREMAGELIKLAAERELRQGESI
SPTEGVYEEFCARFPYTETDDQLRTIGDVIHDLGSGRPMDRLVCGDVGFGKTEVALRAAF
VAAMSGLQVAIVAPTTLLARQHYMTFTERFKGLPIRIGQLSRLVKGKEATRVKDELRKGQ
LDIIIGTHALLGSGIDFPNLGLLIIDEEQHFGVAHKEKLKKLKSNVHVLTLTATPIPRTL
QMAMTGIRDLSIIATPPVDRLAVRTFVMPFDPVVVREAFLREHYRGGQSFYVCPRVADLD
EAAEFLKEFVPEVKYVVAHGQMPPGQIEDVMTAFYEGQYDVLLSTTIIESGIDIASANTM
VVHRADMFGLAQLYQIRGRVGRSKIRAYAYLTTPANRRLTDTAERRLHVLQQLDTLGAGF
NLASHDLDIRGAGNLLGDQQSGQIREVGVELYQKMLEEAVSEVKAGSSDWEEELGEWSPT
INLGATVMIPEHYVPDLTQRMSLYRRLADLDTREDVDAFCAEMIDRFGKLPSEVKQLAAI
MIIKGYCKSAGIAKLEAGPKGFVITFRNNKYANPAGLVDFISSMGKSAKIRADHSLALFT
KLDKISQRLQTVAKYTKKLATLATQGHEKPH
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgacccaattatatcttgaggatcgcttttcatacaccttggctggtgtagct
cctggatatgatagtttgttgttgggtcaatttgctcatgaaaaatatacgaaagacaag
ggattacatcttcatttatgtgccgatgataatcatctttgggaactaaaagagactctt
tctttttttgcaccagaagtaaaaattttagtctttcctgcatgggactgtctgccctat
gacagagttagtcctcataacgatgtctccgcacagcgtttaaaatgcctttcagatctt
gcgctatataagctgaccagcccgacgattgttcttgcaactgtcaatgcagccagtcaa
cgagtacctgccgctgacttcatcaaaaattctagtttggtgattgagcttggctctgaa
ctttctatgaatcacgttgctaattttttgtcctatcatggttacaatcgaagcagtcag
gttgctgaagctggtgaattcgctgtgcgcgggggattgattgacctctatccctctggc
tattcacaacccattcgtattgacttcttcggggatgagattgatagcattcgcaccttt
gaccctcttgatcaacgaacaacaggaaaagttaaacgcctcagactcacccctgttgga
gaatatgctcttgacgaagagagcatcaaaagatttagacgcaactatgtgaatagcttt
ggaccttctaagaatgatgccctctatgaaagcatctctgaaggtattaaacataaaggg
gccgaacactggctgcctctgtttcatgataaccttgaaacactttttgattatatcggc
gatgcgacccttagcctcgctgcacaagtggatgaagtggcatcagaacgtttcgatgca
attcaagattattatcaggctcgcgttgaagcaaaagagatcgccgcaaaagataagaaa
agtaatctacccctttaccatcccatacaaccacaagctctctacatccaaaacgaggaa
tgggaagagtgcttagagaggtttagtccactccgcctctcagtctttaaagagccagaa
agcccgagcgtaagagccatagatgtcgttaaaggccgtgattttgctgctgaaagaaat
tctaaggacattaatgtttatgacgcgcttaaagagcatgtcgacacgcttattgaatta
aaaaaacgtgttgttttcgcctgttattcagctggctctgcggaccgtatggaaggtgtc
ctaagagatcatggcataggccctacaggtattgcagaaacatgggaagacattagaaca
agcaataaaaaacttatcgctctggcagtattacccctgtcaaatggatttgagagtgag
gatttggctgtcattacagagcaagatgttctgggtgatcgcctgattagaaaatccaag
cgtcagaaaaaagcggataattttttaactgaagccagtggcttaagtgctggagactat
gtggtccatagtcaacacgggattggtcaatttgatggattagagacagtcaaagtctct
ggggctgctcacgattgtctaaggcttgtttatgctggtggtgataaactttttgttcca
gttgaaaatatcgagatgctatctcgctacggcagcgaagaaacatcaccacaactggat
aaactcggcggtgtagcctggcaggctcgaaaagcacggatgactaaaaaagttcgtgaa
atggccggtgagctcattaaacttgccgctgaacgtgagcttcgccaaggcgaatccatt
agcccgaccgaaggcgtatacgaagaattctgcgctcgatttccttatacagaaacagat
gatcaattacgaacaattggcgatgtcattcacgaccttggttctggtcgtcctatggat
cgtctcgtatgcggcgatgtgggttttggtaagacagaagttgctttaagggccgcattt
gttgctgcaatgtcaggtcttcaagtggcaatagttgccccgacaacgcttttagcacgt
caacattacatgacgttcactgagaggtttaagggattgccaattcgtatagggcaactt
tctcgccttgtgaaaggtaaagaagccaccagagtgaaggacgaacttcgtaagggacaa
ttggatattatcattggcacccatgctttgctcggttcaggcatagatttcccaaaccta
ggccttctgatcattgatgaagaacaacatttcggtgttgcgcataaagaaaagcttaag
aaactgaaatcgaatgttcatgtcttgacacttacagcgacgcctattccgcggacctta
caaatggcaatgaccggaattagagatctttcaatcattgctacaccgccagttgatcgt
ttggctgtacggacctttgttatgccttttgatccagtcgtcgttcgggaagcctttctg
agagagcattacagaggcggacaaagtttctatgtatgcccgcgcgttgccgatcttgat
gaagctgctgaattcctcaaagaattcgtaccagaggtgaaatatgtggtcgcccacgga
cagatgccacccggtcaaattgaagatgtcatgactgccttttatgaagggcaatatgat
gtcttactctcaacaaccatcattgaatcaggcattgatattgcgagtgcaaatacaatg
gttgttcacagagccgatatgttcggcctcgcacagctctatcaaattcgggggcgtgta
ggccgctctaaaataagagcttatgcctatttgacaacgcctgctaaccgccgcctcacg
gacaccgcagaacgccgtctgcatgttcttcaacaattggatacattaggggctggattt
aacttggcttcacatgatttagatattcgcggtgcaggaaacctgctcggtgatcaacaa
tctggtcagatacgagaagtcggtgttgaattatatcaaaaaatgcttgaagaagctgtc
tctgaggtaaaagctggtagcagtgactgggaagaagagcttggggaatggtcgccaaca
attaatctgggcgcgactgtcatgatcccagagcattatgtgcctgatttaacacagcga
atgtctctctatcgccgcctggctgatcttgatacacgagaagatgtggatgcattttgt
gctgagatgattgacagatttggaaaattacccagtgaagttaaacaattagcggccatc
atgatcattaagggatattgtaaatccgcaggtatcgctaaactagaagctggacccaaa
ggttttgtcattacatttagaaataacaaatacgcgaatcctgctgggcttgtagatttt
atcagcagtatgggcaaatctgcaaaaattagagcagatcattctctggctctcttcacg
aaacttgataaaattagccagcgactacaaacagtggctaaatatacgaaaaaattagcg
actctggcgacacaaggacatgaaaaaccgcattag
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