Tistrella mobilis: TMO_a0311
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Entry
TMO_a0311 CDS
T02128
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tmo
Tistrella mobilis
Pathway
tmo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TMO_a0311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmo03400
]
TMO_a0311
Enzymes [BR:
tmo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TMO_a0311
DNA repair and recombination proteins [BR:
tmo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TMO_a0311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFK55714
UniProt:
I3TSH6
LinkDB
All DBs
Position
pTM1:complement(341301..343739)
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AA seq
812 aa
AA seq
DB search
MAADPLDSYRRKRRFDRTPEPEARSGRTPEGGRLTYAIQKHDARRLHYDLRLEWAGVLKS
WAITRGPSLDPRQKRLAVRTEDHPLAYAGFEGQIPAGQYGAGEVVLWDRGHWEPVGDAED
GLAAGRLDFILHGERLRGRFVLVRMKPAAKAGRAPEKAENWLLIKRDDADADPTGEVTRR
HPGSVAVQPKREAAPLPGFVAPMLATLTDRPPRGPGWVFEIKLDGYRALAAVSGGRAVIR
TRSGLDWTDRFPGIARALAARPGLDGVLLDGEMTAMTADGRTDFSALQAALSAGGEGLHY
GVFDLLAAGGESLRHLPWTTRRARLRALLGAPAGDGIHLVDHSPGPAGDLLDQVCAAGHE
GLIAKRTDAPYRPGRGHAWLKVKCSQAGEYVVVGTSPSEAGRPFASLLLAVQDRGTCRYA
GRVGAGFSDRDFAWLAPRLTALARRTPPVDRDSLPPAVARAARWVEPRIVVQIAHGGLTG
EGLIRQGRYLGPREDKPAAEVEADRVMAVEEAEAMDETGDSLRGVRLTHPDRVLFPEQGI
TKRDLARWFDAVAGLMMPHLENRLVSLVRCPEGRRKACFFQRHAGRGLPRGFASRKLTDS
LGSTEEYVLVRDPEGLVGAAQIGVLELHLWGSRIDRPQRPDRLVFDLDPDPAVGFEAVRQ
AAFDMRDALAALDLASVPLLTGGKGVHVVVPITRRHDWPVVKAAAKALAQRFADHDPGRF
VATMSKAKRRGRIFIDHFRNDRTATAICPWSPRARAGAPVARPVDWQMLAGIDRADAFRL
GDPLPATDPWAGLVPPRQGLTAAALRALGVAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgacccgctcgacagctatcgccgcaagcgtcgcttcgaccgcacgcccgag
ccggaggccaggagcgggcgcacccctgaaggcggcaggctgacctatgccatccagaag
cacgacgcccggcggctgcattacgatctccggctggaatgggccggggtgctgaaaagc
tgggcgatcacccgcggccccagcctggaccccaggcagaaacggctggcggtgcgcacc
gaagaccaccccctcgcctatgccggtttcgaagggcagatccccgcgggccagtacggc
gccggcgaagtggtgctgtgggatcgcggccattgggagccggtgggtgatgccgaggac
gggctcgccgccggccggctggacttcatcctccatggcgagcggctgcgcggccgtttc
gtgctggtgcgcatgaaaccggcggccaaggccggacgggcgccggaaaaggccgagaac
tggctgctgatcaagcgcgacgacgccgatgccgacccgacgggcgaggtgacccgccgc
caccccggcagcgtggcggttcagccgaagcgcgaggccgcccccctgcccggcttcgtg
gcgccgatgctcgccaccctgaccgaccggccgccgcgcgggcccggctgggtgttcgaa
atcaagctcgacggctatcgcgccctcgccgcggtgtcgggcggccgggccgtcatccgc
acccgatcgggcctcgactggaccgaccgcttccccggcatcgcccgggcgctggcggca
cggccgggcctggacggcgtgctgctggacggcgagatgacggcgatgacggcagacggc
cgcaccgatttctccgccctgcaggcggcgctctccgccgggggcgaggggctgcattac
ggcgtcttcgacctgctggcggcgggcggggaaagcctgcgccacctgccctggaccacc
cgcagggcccggctcagggcgctgctgggggcgcctgcgggcgacggcatccaccttgtc
gatcacagccccggcccggcgggggacctgctggaccaggtctgcgcggcgggccatgag
gggctgatcgccaagcggaccgatgcgccctatcgcccgggccgcggccatgcctggctc
aaggtcaaatgcagtcaggcgggggagtatgtcgtggtcggcacctcgccctccgaagcc
gggcggcccttcgcctcgctgctgctggcggttcaggatcgcggcacctgccgctatgcc
ggccgggtgggcgccggtttcagcgacagggatttcgcctggctggcaccgcggctgacg
gcgctggcccgcaggaccccgccggtcgaccgcgacagcttgccgcccgccgtggcccgg
gcggcgcgctgggtggagccgcggatcgtggtccagatcgcccatggcggcctgaccggc
gaggggctgatccgccagggccgctatctgggcccgcgcgaggacaagccggcggccgaa
gttgaggcggaccgggtgatggccgtcgaggaggcagaagcgatggacgagaccggtgac
agcctgcgcggcgtgcgcctgacccatcccgaccgggtcctgttccccgaacagggcatc
accaagcgcgatctcgcccgctggttcgatgccgtggccgggctgatgatgccgcatctg
gagaaccggctggtcagccttgtgcgctgccccgagggccgccgcaaggcctgtttcttt
cagcgccatgccggccgcggtctgccccggggtttcgccagccgtaaactgaccgatagc
ctgggcagtaccgaagagtatgttctggtccgcgatccggaaggtctggtgggtgcggca
cagatcggggttctggagctgcatctctggggatcgcgcatcgaccggccccagcgcccg
gaccggctggtcttcgatctggacccggatccggcggtagggttcgaagccgtgcgccag
gcggctttcgacatgcgcgacgcgcttgccgccctcgacctcgcctcggtgccgctgctg
accggcggcaagggcgtgcatgtggtggtgccgatcacccgccggcacgactggccggtg
gtgaaggcggcagcgaaggccctggcgcagcgcttcgccgaccacgatcccggccgcttc
gtcgcgaccatgagcaaggcaaagcgcaggggccggatcttcatcgaccatttccgcaac
gaccgcaccgccaccgccatctgcccctggtcgccccgcgcccgggccggcgccccggtg
gcccggccggtcgactggcagatgctggccgggatcgaccgggccgacgccttccgtctg
ggcgacccgctgcccgcaaccgacccctgggccgggctggtgccgccccgccaggggctg
acggcggcggcgctcagggcattgggtgtggcagaatag
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