Tenacibaculum mesophilum: F9Y86_07765
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Entry
F9Y86_07765 CDS
T06242
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmp
Tenacibaculum mesophilum
Pathway
tmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F9Y86_07765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmp03400
]
F9Y86_07765 (mfd)
Enzymes [BR:
tmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9Y86_07765 (mfd)
DNA repair and recombination proteins [BR:
tmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F9Y86_07765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QFS28294
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All DBs
Position
1732508..1735882
Genome browser
AA seq
1124 aa
AA seq
DB search
MSKQAIVNHYQQSENVKQIVHQLQQDPHHFQLTNLVGSSLSFVISETFKQADKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAI
IVTYPTALFEKVVTKKELEKNTLKVVVGEQVSLDFVNEVLFEYHFKRVDFVTEPGEFSVR
GGIIDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSKEKLKKVSIMPNVENKTLQESRE
SFLKYISAKTAVFVKNLDLLSDSLDKFYRKAELSFNELSTEIKHAKPEELFCNGELIRNQ
LQDFTTVDIGKNRHSERSEKPQGSAELNLTNVSINFDTHPQPSFNKKFDLLIQNFNEFSA
KGFTNYILCSNEQQAQRFHDIFDDHEEEVSYETIVFPLYQGFVDIDSKIVCYTDHQIFER
YYKFRLKNGYAKKQSITLQELTKLDVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIY
GDRDILYVSIHSLHKISKFNGKDGKPPKVYKLGSNAWKKVKQKTKARVKHIAFNLIQLYA
KRKLQKGFAFGPDTHMQHELEASFLYEDTPDQFSSTQEVKADMEKEQPMDRLVCGDVGFG
KTEIAIRAAFKAVDNGKQVAVLVPTTVLAFQHFKTFSKRLKDFPVTIDYLNRFRTTKQRK
GVLEGVADGSVDIVIGTHQLTNKAVQFKDLGLLVIDEEQKFGVAAKDKLKTIKENVDTLT
LTATPIPRTLQFSLMAARDLSVIKTPPPNRHPIETNVIRFSEETIRDAISYEISRGGQVF
FIHNRIENIKEVAGLLQRLVPSAKIGIGHGQMEGKKLEELMLGFMNNEFDVLVSTTIIES
GLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHHMTDDARKRIQAL
ELFSDLGSGLNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILHEAIEELKENEFKD
LYPTDENAPKEYVKEVQIDTDFEILFPDDYVNSVTERLSLYNKLGTLTTEEELQTFETEI
IDRFGEYPTQVADLLDSVRIKWLAKELGLEKVILKQKRMLGYFVSDQQSAFYQTESFTKM
LRYVQQNPKSCVMKEKKTKNGLRLLITFIKIDSVHKALETLQKV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagcaagcaattgtaaatcactatcaacaatctgaaaatgtaaaacagattgtt
catcagcttcaacaagatccacaccattttcaactaacgaatttggtcggttcttcgttg
tcttttgtcatttccgaaacttttaaacaagccgataaaccctacttgttaatttttaac
gacaaggaagaagctgcttattatctaaacgatttagagcagttattgggcgataaaaac
gtgctgttttatccgggttcgtatcgcagaccgtaccagattgaagaaaccgacaatgcc
aatgtactgctacgttcagaggtgttaaaccgtatcaattctcgtaaaaaacctgcgatt
attgttacttaccctactgccctgttcgaaaaagtagtcaccaaaaaagaactggaaaaa
aacacgctaaaagtggtggtgggcgagcaagtatcgctcgattttgtcaacgaagtatta
ttcgaataccattttaaacgtgtcgattttgtaaccgaaccaggagagttttcggtacgt
ggtggaattatcgacgtgttttcgttttcacacgacgaaccctatcgtattgagtttttt
ggtgatgaggtagacagcatccgaacttttgatgtagaaacgcaactttctaaagaaaaa
ctgaagaaagtgagcattatgcccaatgtagaaaacaaaacactacaagaaagcagagaa
agctttttaaaatacatatcagcaaaaaccgctgttttcgttaagaatttagatttacta
agtgattcactagataaattctatcgaaaagcagaactatcgtttaacgaattatctacc
gaaatcaaacacgcaaaaccagaagaattgttttgcaacggagaactcatacgtaatcaa
ctacaagattttacaacggttgacattggtaaaaaccgtcattctgaacgaagtgagaaa
ccgcaaggttcagcggagctaaatctcactaacgtaagcatcaacttcgatacccaccca
caaccgtctttcaacaaaaaattcgacctgttaattcagaatttcaatgagttttcggcc
aaaggatttaccaattatattttatgttctaacgaacagcaagcacaacgtttccacgat
atttttgacgaccatgaagaagaggtttcttatgaaaccattgtgtttccgttgtatcaa
ggatttgtggatattgatagcaaaattgtttgttatactgatcatcaaatctttgagcgt
tattacaaattccgactcaaaaacggatacgcgaaaaagcaatccatcaccctacaagag
ctcaccaaattagacgtaggcgactatgtaacacatatcgaccacggtattggaaagttt
ggcggacttcaaaaaatagatgtagaaggcaaaaaacaagaggccattaagttaatttat
ggcgatcgcgatattttatacgtgagtattcactcgctacacaaaatttccaaattcaac
ggaaaagacggaaaaccgcctaaagtatataaactagggtcgaatgcttggaaaaaagtc
aagcaaaaaaccaaagcccgtgtaaaacatattgcgttcaacttaattcagttatacgca
aaacgaaaactacaaaaaggatttgctttcggacccgacacgcatatgcaacacgagttg
gaagcgagtttcttatacgaagacacacccgatcagttctcttctacccaagaagtaaaa
gctgatatggaaaaagaacaaccgatggatcgtttggtgtgtggtgatgttggttttgga
aaaacagaaattgccattagagcggcttttaaagcggtagataacggaaaacaggttgcg
gtgcttgtaccaactacagttttagcatttcagcactttaaaaccttttctaagcgatta
aaagactttccggttacgattgactacctaaaccgttttagaaccacaaaacagcgcaaa
ggcgtgttagaaggggttgctgatggaagtgtagatattgtgataggaacacaccagtta
accaataaagcagttcagtttaaagatttgggattattggttattgatgaggaacaaaaa
ttcggggtagcagcgaaagataagctaaaaacgattaaggaaaatgtagatacattgacc
ttaacagcaacaccaatcccgcgtactttacagtttagtttgatggcggcgcgtgattta
tcggtaattaaaacaccaccacccaaccgtcaccccatagaaaccaacgtgattcgcttt
agtgaagaaaccattcgcgatgcgatttcgtacgagatttctcgtggtggacaggtgttt
tttatccataaccgtattgaaaacatcaaagaagtagcaggattgttacaacgtttggtg
ccaagtgcaaaaattggcattggacacggacaaatggaaggaaaaaagttagaagaactc
atgcttggttttatgaacaatgagtttgatgtgttggtgtctaccacgattattgaaagt
ggattggatgtaccgaatgcgaatacgattttcatcaacaatgcgaataatttcggactg
tcggatttacaccaaatgcgtggtcgtgtagggcgttcaaacaaaaaagccttctgttat
tttatcacaccaccgtatcatcatatgaccgatgatgcacgtaaacgaattcaggcatta
gagttgttttctgatttaggaagcggattgaacattgccatgaaggacttagagattcgt
ggtgctggagatttattaggtggagaacaaagcggatttatcaacgatattggttttgat
acctatcagaaaatcttacatgaagccattgaagaactcaaggaaaatgaattcaaagac
ttatatcctacggatgaaaatgcgccaaaagagtatgtaaaagaggtacaaattgatacc
gattttgaaattctattcccagatgattatgtgaattcagttaccgaacgtttgagttta
tacaacaaattaggaactttaactacggaagaggaattacaaacctttgagactgaaatt
atcgaccgttttggagaatatccaacccaagttgccgatttattagacagtgttcgtatt
aaatggttggcaaaagaattaggtttagaaaaggtgattttaaagcaaaaacgcatgtta
gggtattttgtatccgatcagcaaagtgctttttatcaaactgaatcatttaccaaaatg
ttgaggtatgtacagcaaaatccgaagagttgtgtaatgaaagaaaagaaaaccaaaaac
ggattgcgcttactcatcacgtttattaaaattgatagtgtacacaaggcgttagaaacc
ttacagaaagtataa
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