Thermaerobacter marianensis: Tmar_0100
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Entry
Tmar_0100 CDS
T01388
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmr
Thermaerobacter marianensis
Pathway
tmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tmar_0100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmr03400
]
Tmar_0100
Enzymes [BR:
tmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tmar_0100
DNA repair and recombination proteins [BR:
tmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tmar_0100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_30
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADU50225
UniProt:
E6SL23
LinkDB
All DBs
Position
100322..103981
Genome browser
AA seq
1219 aa
AA seq
DB search
MTTLPAQDLTEDLLRLWQQLPEFPSLAGGVRRELPAQAVYGLAGPAAASLLAALAAATGR
TLFIFTADQGAADALAADLRAWAPAEQVVVFPSIEVLPFEVLAASPELLALRLEALARIR
QGPCLVVAPVGAVARRLPRPERWAAGLIDLEPGRVLDRDELLARLVAAGYQRAEQVDRPG
EVAVRGGIVDVYPPAGEPVRIEFFGDEIDSLRRFDPGSQRSTETLARVRLVPARELVLDG
PAWQQGLRALAGEIERLREQTRQRRGGAARQLLERLEQDLARLEAERPLDLAERYLPFFE
PAMATLLDYAPGPALAVWVEPRNLEEAVADRERQWQERQADLLSRGEILPAQASLYLDEP
GLWRALASRPVLYLSLLLRAPGQGPDPRQVYGITARPAPMFHGQWDLFEEEVRTWKRQQY
RVLVVAGDGERAERLRRALDEADVVARLVPGLTLPAPGEVLVAPAALSEGFEVPALRWVV
LTEREVLGRRVARRRSPTTAADRAETQALERLVDLKPGDYVVHVHHGIGRFLGLRTMEIQ
GVHRDYLTIQYAGGDRLYVPTDQIELVQKYVGAEGHQPRLAKLGSGEWNKVKQRVKESVR
ELAGELLALYAARQTLRGHAFGPDTPWQRQFEDAFPYQETPDQLEAIAAIKADMERPVPM
DRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAVLVPTTVLAYQHERTFKERFAPFPVTIRT
LSRFASPAEQAEILTGLAQGTIDIVIGTHRLVQPDVRFKDLGLLIIDEEHRFGVAHKERL
KQLKQNVDVLTLSATPIPRTLHMALAGIRDLSRIDTPPENRFPVQTFVVEWHESLVRDAI
QRELRRGGQVFYVHNRVQSIQAVRRRLERLVPEARFAVAHGQMGEGELERVMVDFMAGKA
DVLVCTTIIESGLDMPNVNTLIVEDADRFGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVL
TEDAQKRLQAIKDFTELGAGFKLALRDLEIRGAGNLLGAEQHGFMLSVGFDLYAQLLEEA
VAELRGRRRPARLKPVVDLVVDAHIPDSYIRDARQKIEFYKRVNLAETPADLAEVREALQ
DRYGPPPEPVRNLLALAEIRQLAARCGVFRIEQQGTRVDLEAVAPQAEPLARTCEALRPQ
LGRRLQPVRGRPAAFFRTDGLGEREVLTALRRFLRELVRHTPGGGGGPEGGEGEDAEKAA
AGTPDEPAPATPVRGGVRS
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgctgccggcacaggacctgaccgaagatctcctgcgcctgtggcagcagttg
ccggaattcccctccctggccggaggggtgcgccgggaactgccggcccaggcggtgtac
ggcctggcggggcccgcggcggccagcctgttggccgccctggctgcggccacgggacgg
accctgttcatcttcaccgccgaccagggcgcggccgacgccctggccgccgacctgcgg
gcctgggcgccggcggaacaggtggtggtcttcccctccatcgaggtgctgcccttcgag
gtcctggccgccagcccggaattgctggccctgcgcctcgaggcgctggcccggatccgc
cagggcccttgcctggtggtggcgcccgtcggcgccgtggcccgccgcctgccgcggccg
gagcggtgggccgccggcctgatcgacctggagcccggtcgcgtcctggaccgggacgag
ctgctggcccggctggtggccgcgggctaccagcgcgccgaacaggtcgaccgccccggt
gaggtggccgtccgcggcggcatcgtcgatgtctacccgcccgcgggggagccggtgcgc
atcgagttcttcggggacgagatcgactcgctgcgccggttcgaccccggcagccagcgc
tccaccgagaccctcgcgcgggtccggctggtgcccgcccgggaactggtcctggacgga
ccggcctggcagcaaggcctgcgggccctggcgggggagatcgagcgcctccgggagcag
acccgccagcgccggggcggtgccgcccgccagctgctggagcgcctggagcaggacctg
gcccggctggaggccgagcgccccctggacctggccgagcgctacctgcccttcttcgag
cccgccatggccaccctcctggactacgccccgggtccggccctggctgtatgggtcgag
ccccgcaacctggaggaggcggtggccgaccgggagcgccagtggcaagagcgccaggcg
gacctgctgtcccggggcgagatcctgcccgcccaggcctccctctacctggacgaaccc
ggcctctggcgtgccctggcgtcccggcccgtcctgtacctctccctgctcctgcgggcg
ccggggcagggtccggacccgcgccaggtctacggcatcaccgcgcggccggcccccatg
ttccacggccagtgggacctgttcgaggaagaggtgcgcacctggaagcgccagcagtac
cgcgtcctggtggtggcgggggacggcgagcgggcggagcggctccgccgggccctggac
gaggcggacgtggtggcccggctcgtccccggcctgaccctgccggcgcccggcgaggtg
ctggtggcgccggccgccctgagcgagggcttcgaggtgcccgccctgcgctgggtcgtc
ctgacggagcgggaggtgctggggcgccgggtggcccgccgccgcagccccaccaccgcc
gccgaccgggcggagacccaggccctggagcggctggtggacctcaagccgggcgactac
gtggtccacgtacaccacggcatcggccggttcctcgggttgcggaccatggagatccag
ggggtccaccgcgactacctgaccatccagtacgccggcggtgaccggctctacgtcccc
acggatcagatcgagctggtgcagaagtacgtgggcgccgagggccaccagccgcgcctg
gccaagctgggctccggcgagtggaacaaggtcaagcagcgggtgaaggaatcggtgcgg
gagctggcgggggagcttttggccctctacgccgcccggcagacgctgcgcggccacgcc
ttcggtccggatacgccctggcagcgccagttcgaagacgccttcccctaccaggagacg
ccggaccagctggaggccatcgccgccatcaaggcggacatggagcgccccgtgcccatg
gaccggttgctggtgggcgacgtgggcttcggcaagaccgaggtggccatgcgggccgcc
ttcaaggcggtgcaggacggcaagcaggtggcggtgctggtgcccaccaccgtgctggct
taccagcacgagcgcaccttcaaggagcgcttcgcccccttccccgtcaccatccgcacc
ctgagccgcttcgcctcgccggcggaacaggcggagatcctgaccgggctggcccagggt
accatcgacatcgtcatcggcacccaccggctggtccagcccgacgtgcggttcaaggac
ctgggcctgctcatcatcgatgaggagcaccggttcggcgtcgcccacaaggagcggctc
aagcagctcaagcagaacgtggacgtattgaccctctcggccacccccatcccccgcacc
ctgcacatggccctggcggggatccgcgacctgagccgcatcgacacgccgccggagaac
cgcttcccggtgcagaccttcgtggtcgagtggcacgagtccctggtgcgcgacgccatc
cagcgggagctgcgccgcgggggtcaggtgttctacgtccacaaccgcgtgcagagcatc
caggcggtgcgccgacggctggaacggctggtgccggaggcgcggttcgccgtcgcccac
ggccagatgggcgaaggggaactggagcgggtgatggtcgacttcatggccggaaaggcc
gacgtactggtctgcacgaccatcatcgagtcgggcctcgacatgcccaacgtcaacacc
ctgatcgtggaggatgccgaccgcttcggcctggcccagctgtatcagctgcgtggccgg
gtgggccgctcggaccgggtcgcctacgcctatttcacctaccgccgtgacaaggtcctg
acggaagatgcccagaagcggctccaggccatcaaggacttcaccgagctgggggcgggc
ttcaagctggccctgcgggacctggagatccgcggcgccggcaacctgctgggcgcggag
cagcacggcttcatgctgtccgtgggcttcgacctctacgctcagctgcttgaggaggcg
gtggcggagctgcggggccggcgccggcccgcccggctcaagccggtggtcgacctggtg
gtcgacgcccacatccccgacagctacatccgcgacgcccggcagaagatcgagttctac
aagcgggtcaacctggccgagaccccggccgacctggccgaggtgcgcgaggcgctgcag
gaccgctacggcccgccgcccgagcccgtgcgcaacctgctggccctggcggagatccgc
cagctggcggcgcggtgcggggtcttccgcatcgagcagcaggggacgcgcgtcgacctg
gaggccgtggcgccccaggcggagcccctggcccggacctgcgaggccctgcgtccacag
ctgggccggcggctgcagcccgtgcgcggccggccggccgcgttcttccgcaccgacggc
ctgggcgagcgggaagtgctgaccgccctgcgccgctttctgcgggaactggtgcgtcac
acaccgggtgggggcggcgggcccgaaggaggcgagggcgaggacgcggagaaggcggcg
gccggcaccccggatgagcccgcacctgccacgccggttcggggcggcgtccggtcctga
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