Tremella mesenterica: TREMEDRAFT_39597
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Entry
TREMEDRAFT_39597 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tms03009
]
TREMEDRAFT_39597
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_39597
Ribosome biogenesis [BR:
tms03009
]
Eukaryotic type
Pre-60S particles
Helicases
TREMEDRAFT_39597
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
18493067
NCBI-ProteinID:
XP_007005344
JGI:
Treme1_39597
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MPRSEALSHSPSRRHVISGGTRSRSQAPIRLKDSQWQRLGVNQSLIHSLLLRGFKSPTPI
QKSTLPLTLASPPRDVLGMARTGSGKTLAYLIPLLQRLSSSAVPVPSIKALILCPSRELA
VQILKAGKDLARGLRKEPLKNEQPLRWAIIMGGESLDDHFEVLSGKPDVVVATPGRMLHL
IVEMSLDLRTLEMVIYDEADRLFEMGFESQLREILHRLPSTRQSLLFSATLPTKVAEFAK
AGLVNPSMIRLDAEQTISADLRLHFAYVKPADKDAAVLALLGVLLGKSGPSSPEGSSQII
IFVATKHHVEYLVCLLRAAGYESAYIYGSLDQVARKTQIDSFRAGRQQILVVTDVAARGL
DIPMIGNVINYDFPTGVRGFVHRVGRTARAGRRGMAWSLVTTGDIAHLFDLDEALSVKIF
DASPPLIGRLPQQVLETHRERIAVGLAESDRSLAALRMVKDRGQAMFERSKSRASADAHR
MSKLWIRSSHDGSDLAVLPVFVTSHPAVANERCDDLLRAIETYRPRTSVGKSSSRVSSKA
VVAVSKLERATVVSEYRQGSADFVPLGALSRSSTNERVFLTVPSSRSSYRNSEFFLPHAR
EDAQHEKTYSINGADCFSSQLRSATFNMSADEGPRPRLQKASQLRWDRRKKKFVQESSID
STNQRMVRSESGALLPASFSSGRFRDWSTRRRVTSAGRGRQHSDRTQAEHQSVRRDGNAT
H
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggtcggaagctctttctcattctccctctaggcgacacgtcatatcaggtggt
actcgcagccgttctcaagcccccatcagactcaaagacagccagtggcaaagactgggt
gtcaatcaatctctcatccactctttactcctgcgcggcttcaaatctcccactcccatc
cagaagtctacgcttcctctcacactcgcttcgccgccaagagacgttctaggcatggct
aggactggatccggaaagacgttggcctatctcattcctcttcttcaacgattgtcttcc
tctgccgtccctgtcccgtccatcaaggctctcattctatgtccaagtcgagagctcgcc
gttcaaatactcaaagctggcaaagatctggctcggggtcttcggaaagaaccgctcaaa
aatgagcaacctctgagatgggctatcatcatgggcggcgaaagcttggacgaccatttc
gaagtgctttctggaaagccggatgtagtagtagctacgccagggcggatgctgcatctc
attgtcgagatgtcgctcgacctccgcacattagagatggtcatttacgacgaagccgat
cggctctttgaaatggggttcgaaagtcaactccgcgagatcttgcaccggctaccctcg
actcgccaaagtctccttttttccgccactctccctaccaaagttgccgagttcgccaag
gccggtctggtcaatcccagcatgattcgactcgatgccgagcaaaccatcagcgcagat
ctacgactacattttgcctatgtgaaacctgccgataaagacgccgcggtgctggctttg
ctcggagtcctgctcgggaaatccggtccatcgagtccagagggttccagtcagatcatc
atattcgtcgcaaccaaacatcacgtagaatacctggtgtgtcttctccgtgcagcgggc
tacgagtcggcatatatatacggatcgctcgatcaggtcgctcggaaaacccagatcgac
tccttccgggccggtcgccaacaaatccttgttgtcaccgatgttgcggctaggggttta
gatattcccatgatcggcaatgtaatcaactatgacttccctaccggggtgagaggattt
gtgcaccgagttgggaggacagcgcgagcgggacgccgtgggatggcgtggtcactggtg
accaccggtgatatagcacatctcttcgacctggacgaggccctttcggtcaaaatcttc
gatgcttcacctccactgatcgggagactgccacaacaagtgctcgaaacacaccgcgag
cggattgctgtcggcctagctgagtccgatcgctctctggcagcgttacgtatggtaaaa
gatcggggacaagcgatgttcgaacgctcgaaaagtcgagcgtccgcagacgctcatcgt
atgagcaaattgtggatccgaagctcacatgatggctccgacttggcggtcctacccgtt
ttcgtcacctcccaccccgctgttgcgaacgaacgctgtgacgatttactacgtgctatc
gaaacatatcggcccaggacttcagtcggaaagtctagcagtcgggtgtcgagcaaagct
gttgtcgccgtctcaaaactcgaacgcgccacggtcgtgagtgagtatcgtcaaggatca
gccgactttgtacctttgggcgctctctcaagatcttcaacaaacgagagagtctttttg
actgttccctcttcgcgaagttcttatcggaactcagaattttttctgccgcatgcacga
gaagacgcccaacacgagaagacatattctatcaacggtgcggactgtttctcgtcacaa
ctccgctcggccacattcaatatgtctgccgatgaaggtcctcgacccagactgcagaag
gctagccagcttcgatgggaccgccggaagaagaagtttgtgcaggagagcagcatcgat
tctaccaatcagaggatggttcgcagtgaaagtggggctttattaccggcgtcattcagc
agcggccgtttccgggattggtccacaagacggcgcgtcacgagtgccggtcgcgggagg
cagcattcggatcgtacccaagctgagcatcagagtgtgagacgagatggaaatgccaca
cattga
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