Tremella mesenterica: TREMEDRAFT_60453
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Entry
TREMEDRAFT_60453 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
tms
Tremella mesenterica
Pathway
tms03013
Nucleocytoplasmic transport
tms03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TREMEDRAFT_60453
03015 mRNA surveillance pathway
TREMEDRAFT_60453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_60453
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TREMEDRAFT_60453
mRNA cycle factors
P-body specific factors
TREMEDRAFT_60453
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
18495086
NCBI-ProteinID:
XP_007002827
JGI:
Treme1_60453
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MTEQAAPSVPPHRTKLVIRRLPPTLPEEIFWTSVSQWVDESCVWRRYVKGKAADGGERAR
YSRAYCLLPDEQAVIFRTDFNGHVYRSKAGEEYQALVEPAPLQKTPNKLKKIDVRQGTVE
TDPDYISFINALSGSPEPPPEVTAVAPVPPPTETTPIIDAIREKKALKSLTQFKETYTTF
TSSKASEDRAKKLALASVTAATEKRTSGQVDSGSVLVAGKGREVTSVPVPNKKKDASPSG
KEDKKKGRNRGKGKGGGGSPARAEGKPMSVTADRLKTPTTPKTIQPTQSEPSVPRPSTGP
SKTPGRSTPSDHGGSDSGRGRGKGGQKAGHNDGRARGGAGGGRGRGRSKDRASDAEGAEG
LKGSRGTRGTGGEQSRRLHAAVTDILKQNSEAERGGGGGRGRRGRGRGRGGPAGGAVESR
IDD
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcaggccgctccatcggtacctccccaccggacaaaactggtcatccggcgc
ctcccccccactctgccggaagagattttctggacttcggtctcgcaatgggtcgacgag
tcatgcgtgtggagacgctatgtcaagggaaaagctgccgatggtggggagagggcacga
tattccagagcttactgccttcttcccgacgaacaagcggtaatctttcgaacggacttt
aacggacatgtttaccgttccaaagctggtgaagaatatcaagcactcgtcgaacctgcc
cctctgcagaagacacctaacaaactgaagaagatagatgttcggcaagggactgtcgaa
accgatccggattatataagtttcataaatgctctttctggttcacccgagccccctcct
gaagttactgccgtcgcacctgttcccccaccgacggagaccacacccattatcgatgct
atacgagagaaaaaggctctcaaatctcttacgcaattcaaagagacttacactactttc
acttcttccaaggcgtctgaagatcgagcaaaaaagttggctttggcaagtgtcaccgct
gccacggagaaacgcacatcgggacaagtcgattcgggatcggtgttggttgcgggaaag
ggaagggaggtgacttcagttcctgtgccaaataagaagaaggatgcttcaccttcaggt
aaagaagataagaaaaagggacgaaatagggggaaagggaaagggggtgggggttcgcca
gctagagcagaggggaagccgatgtctgtgactgcagatagattgaaaacaccaacgacg
ccgaagaccattcaacctacacagagtgaaccatctgtacctcgaccctcgacaggtcca
tcgaagacgccaggcagaagtacaccttctgatcatgggggaagtgattctgggcgagga
agagggaaaggtggtcagaaggcaggccataatgacggaagagcaagaggtggtgcagga
ggaggtcggggaagaggaagaagcaaggatagagctagtgatgcggagggtgcggaggga
ttaaaggggagtagaggaacgagagggacaggaggagaacagagtagacggcttcatgct
gccgtgacggacattctgaaacagaattcagaggcagagcgtggtggaggaggtgggaga
gggagaaggggaaggggaaggggtagagggggacctgcagggggagctgtagaaagtcgt
attgacgattga
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