KEGG   Tremella mesenterica: TREMEDRAFT_60453
Entry
TREMEDRAFT_60453  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
tms  Tremella mesenterica
Pathway
tms03013  Nucleocytoplasmic transport
tms03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    TREMEDRAFT_60453
   03015 mRNA surveillance pathway
    TREMEDRAFT_60453
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tms03019]
    TREMEDRAFT_60453
Messenger RNA biogenesis [BR:tms03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     TREMEDRAFT_60453
   mRNA cycle factors
    P-body specific factors
     TREMEDRAFT_60453
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 18495086
NCBI-ProteinID: XP_007002827
JGI: Treme1_60453
LinkDB
Position
Unknown
AA seq 423 aa
MTEQAAPSVPPHRTKLVIRRLPPTLPEEIFWTSVSQWVDESCVWRRYVKGKAADGGERAR
YSRAYCLLPDEQAVIFRTDFNGHVYRSKAGEEYQALVEPAPLQKTPNKLKKIDVRQGTVE
TDPDYISFINALSGSPEPPPEVTAVAPVPPPTETTPIIDAIREKKALKSLTQFKETYTTF
TSSKASEDRAKKLALASVTAATEKRTSGQVDSGSVLVAGKGREVTSVPVPNKKKDASPSG
KEDKKKGRNRGKGKGGGGSPARAEGKPMSVTADRLKTPTTPKTIQPTQSEPSVPRPSTGP
SKTPGRSTPSDHGGSDSGRGRGKGGQKAGHNDGRARGGAGGGRGRGRSKDRASDAEGAEG
LKGSRGTRGTGGEQSRRLHAAVTDILKQNSEAERGGGGGRGRRGRGRGRGGPAGGAVESR
IDD
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgaccgagcaggccgctccatcggtacctccccaccggacaaaactggtcatccggcgc
ctcccccccactctgccggaagagattttctggacttcggtctcgcaatgggtcgacgag
tcatgcgtgtggagacgctatgtcaagggaaaagctgccgatggtggggagagggcacga
tattccagagcttactgccttcttcccgacgaacaagcggtaatctttcgaacggacttt
aacggacatgtttaccgttccaaagctggtgaagaatatcaagcactcgtcgaacctgcc
cctctgcagaagacacctaacaaactgaagaagatagatgttcggcaagggactgtcgaa
accgatccggattatataagtttcataaatgctctttctggttcacccgagccccctcct
gaagttactgccgtcgcacctgttcccccaccgacggagaccacacccattatcgatgct
atacgagagaaaaaggctctcaaatctcttacgcaattcaaagagacttacactactttc
acttcttccaaggcgtctgaagatcgagcaaaaaagttggctttggcaagtgtcaccgct
gccacggagaaacgcacatcgggacaagtcgattcgggatcggtgttggttgcgggaaag
ggaagggaggtgacttcagttcctgtgccaaataagaagaaggatgcttcaccttcaggt
aaagaagataagaaaaagggacgaaatagggggaaagggaaagggggtgggggttcgcca
gctagagcagaggggaagccgatgtctgtgactgcagatagattgaaaacaccaacgacg
ccgaagaccattcaacctacacagagtgaaccatctgtacctcgaccctcgacaggtcca
tcgaagacgccaggcagaagtacaccttctgatcatgggggaagtgattctgggcgagga
agagggaaaggtggtcagaaggcaggccataatgacggaagagcaagaggtggtgcagga
ggaggtcggggaagaggaagaagcaaggatagagctagtgatgcggagggtgcggaggga
ttaaaggggagtagaggaacgagagggacaggaggagaacagagtagacggcttcatgct
gccgtgacggacattctgaaacagaattcagaggcagagcgtggtggaggaggtgggaga
gggagaaggggaaggggaaggggtagagggggacctgcagggggagctgtagaaagtcgt
attgacgattga

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