Tremella mesenterica: TREMEDRAFT_72606
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Entry
TREMEDRAFT_72606 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tms
Tremella mesenterica
Pathway
tms03022
Basal transcription factors
tms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TREMEDRAFT_72606
09124 Replication and repair
03420 Nucleotide excision repair
TREMEDRAFT_72606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tms03021
]
TREMEDRAFT_72606
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_72606
Transcription machinery [BR:
tms03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TREMEDRAFT_72606
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TREMEDRAFT_72606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
DZR
Motif
Other DBs
NCBI-GeneID:
18498775
NCBI-ProteinID:
XP_007002100
JGI:
Treme1_72606
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MPDDDNYDPTADLEYEEVDDDDQPRTSTAAKGKHNASVNGQAEKGQAVWEGTYNRSWDVV
QEDAEGGLQSAVDSLIARGRRKRAEIDTPLRRSIIRHMFIILDLSESVLDKDFRPSRFEL
TLQYMRSYVVEWFDQNPLGQIGMIIMRDRLSEVLIPMGGNPQEILSVLTDKRKLEPSGEP
SLQNGLVMAKGGMSHLPSTSSLEILVVFSSISTADPDGPINIHQVLSDLSSSRVRTSIIS
LSGEIKICRQICQRTGGKFGVAMDEDHLRELLWETIPPPAQTQSSNPTTLGVRNALAAGG
NRVDGDGSRPPPVGDLMVMGFPVRLPPGGETLCVCHGLLKKGGYLCPRCGSKLCDVPTDC
EVCGLMVVSSPHLARSFWFLFPVAHYDALTVETTMGDRERSSPTCYGCDRSFKTMDETGS
AHVVDGISPTGRYRCARCFKDFCSECDLYIHDTLHTCPGCSQ
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgccggatgatgacaactacgatccaacagctgatctagagtatgaagaggttgatgac
gatgatcaaccgagaacttcgacagccgccaagggaaagcacaacgctagtgtgaacggc
caggccgagaaaggacaggcggtctgggaaggcacatacaaccgaagctgggatgtggta
caggaagatgcggagggtggtttacagagcgctgtcgacagtctcatagctcgtggtcga
cgaaagagagcagagatagacacacctctacgacgatccatcataagacacatgtttatc
atcctcgatctgtcagaatcggtattggacaaagactttcgtccttctcggttcgaactg
acccttcaatacatgcgatcatacgtcgtcgaatggtttgatcaaaatccgttaggacaa
ataggtatgattatcatgcgggatagattatcagaggttttgatacctatgggaggtaat
ccacaagaaatcctttccgtcctcactgataaacgcaaacttgaaccttccggtgaacca
agcttacagaacggtctggtcatggctaagggaggtatgagtcacctcccttccacttca
tccctcgaaatcctagtggtattctcttccatatcaactgccgatcctgacggtcctatc
aacattcatcaagtcctctccgatctctcatcctccagagttagaacttccatcatctcc
ctttctggtgaaatcaagatatgtcgtcagatatgtcaacgaacgggtggaaaattcggt
gtggcaatggatgaagatcatcttcgtgaattattatgggaaaccatacctccccctgcc
caaactcaatcatccaaccccaccacattaggagttcggaacgctctggcggcaggtggg
aacagggtcgatggagatggaagtagaccacccccggtcggagatctcatggtcatgggc
tttccggtgagattaccacctggtggtgaaacactttgtgtttgtcatgggttgttgaaa
aagggaggatatctctgtcctagatgtgggagcaagttgtgtgacgtcccgactgattgt
gaggtttgtgggttaatggtggtcagtagtcctcatttggcaagaagtttttggttctta
ttccccgtggcccattatgacgctcttactgttgagaccaccatgggggatagagaaaga
tcatcaccgacatgctatggatgtgatagatctttcaaaaccatggacgagacaggcagt
gcgcatgtcgtcgatggaatatcccccacaggaagatatagatgcgcaagatgtttcaag
gatttctgctcagaatgtgatttgtatattcacgataccctgcatacatgtcccggatgt
tcacagtga
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