Tetraodon nigroviridis (spotted green pufferfish): GSTEN00015396G001
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Entry
GSTEN00015396G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00015396G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00015396G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00015396G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00015396G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-ProteinID:
CAF97895
UniProt:
Q4SN87
LinkDB
All DBs
Position
8
AA seq
934 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWLASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRFHI
RMLETILRMLDNDSIPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNMEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEEDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGVPAVPTSSSLIGSFSSAVQQHQHPP
AQQPPPSQQPQQQQQQQQQQQQQQQQQQQQPQPQPQQQPQPQQQPPPSQSKAPPQANNTP
SPPGNPLLTASTAPSLPTPSTPVSSASSSQSQSTPVPTPSLGLGLGLGLGKVGLTGTSSA
NQMAALGLGGHPSPLNTMAGLISGSTPAPYAQAAASGGLGLNSSTQSAISSESSTSIPTS
GSSGATTNGAGTGLGLLGTSPAHNSLSGSILGLVPGQSAAPGAAQVAPSSVNSAPGVVGM
LGSNGGNVGVVGGVGVNAVPARPPSGLKQNGSTSYSAVVAESSAESALSTPGQSQSSQPS
SLSSSTSQPLDNGPSLISSITLPPSSPSPSFSDSTPGGGSLLNGPHSYTQASESLKAPEP
LSSLKAMAERAALGSGLDGEIANLHLTERDIFSGSSAAPGTPAAPQPSVSEVSIPPSLGV
CPLGPTPLPKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHKVPPFHSDS
IEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEF
EQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgaaattgatagatgcttgaaaaaggtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagcttcacaatgcagccaacgcaaaccag
aaggaaaaatacgaggctgacctcaaaaaagagattaaaaaactacaacgattgcgagac
cagataaaaacatggttagcctcaaacgaaatcaaagacaaaaggcagctaatcgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggttgtagagcgggaaacaaaaaca
aaagcgtactcgaaagagggcttggggctagctcagaaagtcgacccggctcagagagaa
aaggaggaaacgggacagtggctaacgaatacgatagacacgctaaatatgcaggtggat
cagtttgaaagtgaagtggagtctctctcagttcagacgaggaaaaagaagggcgataaa
gagaagcaagatcgcattgaggagctgaagaggctcatcgagaggcaccggttccacatc
cgcatgctggagaccattttacgaatgctggacaacgactccataccggtggactccata
cagaagatcaaagacgacgtggaatactacatcgattcatcccaggaccccgactttgag
gagaacgagttcctgtacgatgacttagatctggaagacatccctgcagctttggttgca
acctctccctcaggtcagggtaacatggaagatgagatgtaccttcactccagcagcact
cccacgtccaccacctcgtcctcacccatccctccatccccggccacttgcactgcggag
aactcagaagaggataagaaaagggggcggtcgacagacagtgaagttagtcagtcaccc
gtgaagaatggcacgccctccttgctttcttctttctcttcctccaccacgtcgggctcc
tcctcgtcctcctcgctggtgtccatggccagcgtggtgggaggcgtgcccgccgtcccc
accagcagcagtctgatagggagcttcagcagcgccgtgcagcaacatcagcatccacct
gcacaacagccaccccccagtcaacaaccgcaacagcagcagcaacaacaacaacaacag
caacaacaacaacaacagcaacaacaacaaccgcagccgcagccgcagcagcagccgcag
ccgcagcagcagccgccgccgtctcagtccaaagctcctccccaagcaaacaacaccccc
agcccaccgggcaatcctctcctcacagcctcaactgccccgtctctacccacgcccagc
acacctgtctcatcggcttccagctcccagtcgcagtccacaccagtgccgacgcccagt
ttgggactgggtctgggcttgggcctgggcaaagtcggcctgacgggtaccagcagtgcc
aaccagatggctgctttgggtctgggaggacacccgagtccgctcaacacgatggcgggg
ctgatttcaggctccacgccggccccctacgctcaggcagccgcgtcggggggcctgggt
ctgaacagcagcacccagtccgccatttcatcggaaagcagcacttccatccccacatcc
ggctccagtggagccaccaccaacggggcagggacgggcctgggcttactgggaaccagc
ccggcacacaattccctaagcgggagcattctgggtttggttccgggacaaagcgcggcc
cccggtgccgctcaggtggccccgagctccgtcaacagtgcacctggagtggtgggcatg
ctgggaagtaatggagggaacgtgggcgtcgtcggaggagtcggggtgaacgctgtcccc
gccagacctcccagtggactcaaacaaaacggaagcacgagttacagtgccgtggtggca
gagagctcggcagaatcggccctgagcaccccaggccagtcccagagcagccagccctcg
tctctcagctcttcgaccagtcagccgttggacaacggccccagtctgatcagctccatc
accctgcctcccagttctccgtccccttccttctcagacagcacaccgggaggaggcagc
ctcctcaacgggccacactcctacactcaggcctcggagagcctcaaggctcccgagccc
ctcagttctctgaaggcgatggctgagagagcagcgctgggatccggcctggacggagag
atcgccaacctgcatttaacggagcgagatatcttctctggatcgtctgcggccccgggc
acgcccgccgcccctcagccgtccgtgtcggaggtcagcatccccccctcgctcggggtg
tgtccactgggccccacccctctgcccaaagaccagctgtaccagcaggccatgcaggag
tcggcgtggacacacatgccccacccctctgactccgagaggatcaggcaatacctgatg
aggaacccgtgccccaccctgcccttccatcacaaggtaccaccgttccactctgactcc
atagagttctaccagagactgtccacagaaacactgttcttcatcttctactacctggag
ggcaccaaggctcagtatctgtccgccaaggctctgaagaagcaatcgtggaggtttcac
accaagtacatgatgtggttccagaggcacgaggagcccaagacgatcacggatgagttt
gagcagggcacttacatttactttgactacgagaaatggggccagaggaagaaggagggc
tttacttttgagtacaggtacctggaagaccgagacctgcagtga
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