Tetraodon nigroviridis (spotted green pufferfish): GSTEN00017945G001
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Entry
GSTEN00017945G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
GSTEN00017945G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tng04131
]
GSTEN00017945G001
Membrane trafficking [BR:
tng04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
GSTEN00017945G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
Clathrin
CNH
Motif
Other DBs
NCBI-ProteinID:
CAF99758
UniProt:
Q4SHX4
LinkDB
All DBs
Position
5
AA seq
842 aa
AA seq
DB search
MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYLGTNDCFIHHFLLDEVTSSKGKL
SYSAQKLLHKYLGLKKPVTELRAASALERLIVLCDGFVFLVDMVTLETVPSAAGGGAKIR
GVTAFCINENPVNGDPFCVEMGVLSSKRRTVQIFMVYEDRVQLVKERRKESPIVKRIGRE
EFLLAAPGGLGKPTQLRVWILLFTLQTKPPNVSFLPSGMFANAEGASQRAPVNWSESVMG
AAVCFPYVVALDESFITIHSMLDQQLKQTLSFRDGHILQDFEGKVMLASTKAVYVLVPLP
LEKQIQDLLANHRVEEALVLTEGAQRNIPKDKFQILHKRILQQAGFIQFGLLQFQEAKEY
FRKGHLDVRELISLYPLLLPASSSFTRCHPPLHEFADLYHLAQGDQEKVLRCKQFLISYL
GEVRSTEVANGCREDVDTALLKLYAEQDQDRLLELLSSSNACLLADSVPWLEKYHKYFAL
GLLYHYNRQDATALQLWIRVADGDLQDSTRSDLYEYIVNFLCSCSCLDLVWKYADWALQK
DPAVGVSIFTKRSCAKDQPQLNPDDVIEYLGRHSRALLLYLEHLVLEKKTQKEKYHTHLA
VLYLEKVLSLLSASPPDEEQLSRARERLQGMLRGSDLYRVQYLLGKMEDCEQLLLERATL
HGKLEEYDKALQILVHKLRDFRSAEAFCTWAASGRDPSYQERLFHQLLGVYLTGNETAEG
GGGSGDLKMAAVDLLNRHGEVFDAARVLQLLPEEWSLQLLRPFLARAVRASMHASRTSQI
ALGLSRSEHLQMLHDRLKERKKPIFVSEKKGCHLCHNTFSEPDVVCLPGAVPVHIGCVAR
RV
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagctggtccccgctgtggaacgagatctcctcatgggcgac
aaggctcgcatcaatattgagtgcatcgaatgctgtgggaaacatttgtatttgggtacc
aacgactgcttcattcatcactttctgctggacgaggtgacctcctcgaaaggaaaactg
agttactcggcccagaagttgctgcacaaatacctgggtcttaagaaacctgtcacggag
ctgagggctgcttctgctttggagcgactgatcgtgctttgcgatggattcgtcttcctt
gtcgacatggtaacgctggagaccgtgccctctgcggcaggtggcggagccaagatccga
ggcgtgacggccttctgtatcaacgagaacccggtgaatggcgatccgttctgtgtggag
atgggtgtgctctcctccaaacgccggactgtgcagattttcatggtgtacgaggacaga
gtgcagctggtcaaagagcgaagaaaggagtcacccattgtgaagagaatcggcagagaa
gagttcctcctagcagcacccggtggtctcggtaagccaacacaactaagggtttggatt
ttactatttactctccaaacgaaacccccaaatgtatctttcctcccatcagggatgttt
gccaatgcagaaggagcatctcagcgggccccagtcaactggtcggagagtgtgatgggt
gccgctgtgtgttttccgtacgtggtggctttggatgagagcttcatcaccatccacagc
atgctggaccaacagctgaagcaaacgctttctttcagggacgggcacatcctgcaagac
ttcgaaggaaaggttatgctggcttccaccaaggctgtgtatgtgctggtgcctctgcct
ctggagaaacaaattcaggacctgctggccaaccaccgggtggaggaagcgctggtgctc
acagagggagcacagaggaacatccccaaagacaagtttcagattttgcacaaaagaatt
ctacaacaggcagggttcatacagtttggccttcttcagtttcaagaagccaaagaatac
tttagaaagggtcacctggacgtgcgggagctgatctcgctctaccccctgctgctgccg
gcttcctcctccttcacgcgctgccatcctcctctccacgagtttgcagacctttaccac
ctggctcagggcgaccaggagaaggtgctgcgatgcaaacagttcctcatcagttatttg
ggagaggtgcggagcacagaggtggcaaatggttgcagggaggatgtggacacggcgctg
ttgaagctgtacgccgagcaggatcaagaccgcctcctggagctcttatcttcaagcaac
gcctgcctcctcgctgacagcgtcccatggttggagaaataccacaaatattttgcactt
ggactgctctatcattacaaccgtcaggatgccacagcgctccagctgtggatccgcgtg
gcagacggagatctgcaggactcgaccagatctgatctttatgaatacatcgtgaacttc
ctgtgttcctgctcgtgtctggacctagtgtggaagtacgcagactgggccttgcagaag
gatccggctgtaggcgtcagcatcttcaccaagaggtcttgcgctaaagatcagccccag
ttaaaccccgatgatgtcatcgagtacttgggaaggcacagccgggcgttgcttctgtat
ttggaacatttggtgcttgagaaaaagacgcagaaagagaaataccacacgcatttggcc
gtgttatacttggagaaggttttgtctttgttgtcggcctcaccgccggatgaggagcag
ctgtccagagcgagagagaggctccaggggatgctgcgggggtccgacctgtaccgtgta
cagtatctgttaggtaagatggaggactgtgaacaactgctgctagagcgcgcaacacta
catggaaaactggaggagtacgacaaagccctgcagatactggtgcacaagctcagagac
ttccgttctgctgaggccttctgcacgtgggctgcctctggacgggatccttcctaccag
gagaggttgtttcaccagctcttgggggtttatttaaccgggaacgagacagcggaagga
ggcggtggcagcggagacctgaagatggcagcagtggacctcctgaacagacacggagag
gttttcgatgcggcccgagtgctgcagctgctccctgaggaatggtccctgcagctcctc
cgacccttcctggctcgagccgtcagggcgagcatgcacgccagtcgcacctcccagatt
gcgttggggttgtcccgttccgagcacctgcagatgctgcacgacaggctgaaggagcgg
aagaaacccatcttcgtgtcagaaaagaagggatgtcacctgtgccacaacaccttcagc
gagcccgacgtggtgtgtctgcccggcgcggtgcctgtccacatcggctgcgtcgcccgc
agggta
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