Tetraodon nigroviridis (spotted green pufferfish): GSTEN00019603G001
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Entry
GSTEN00019603G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GSTEN00019603G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00019603G001
Enzymes [BR:
tng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GSTEN00019603G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
GSTEN00019603G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CAG00994
UniProt:
Q4SED8
LinkDB
All DBs
Position
3
AA seq
896 aa
AA seq
DB search
AAAQLSVAAQVPFLHLCTTLEKIQKAKARPDKSKILGDFIESWRNFHTALHKNSKTTDSF
YPAMRLLVPQFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAPTTSQGEAGD
FASVAYFVLKKRCTSQGSLRVKEVNDFLDSVAINNANKKKDLVKKSLLHLITHSSALEQK
WLIRMILKDMKLGVSKETVLQVFHPDSPDLYNVNTDLNKVCQQLHDPSVSLSDVSIELFS
AFKPMLAAVANIRSVEKQMGNSLFYIQTKLDGERIQLHKDGDVYKYFSRNAFEYTQQFGG
SPLQGSLTPYIHNVFQSNVVNCILDGEMMAYNPTTETLTQKGSKFDIKKLMDDSELQTCF
CVFDVLLVNDRKLGKEPLKKRYEALQTVFTPVKGRIHLVSKSDARSTQEVVKALNEAIDS
REEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKRSARRDDVPLP
APKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVFRKSDPPASILCGTEKPEVYI
EPRNSVIIQVKAAEIVSSDMYKTSCTLRFPRIERIREDKEWHECMTLAQLEQFRGKASGK
LASRHLLMDDDDPQKKKRRVPFKPKKAVGLLEHFKAQDLSGVRKETDMFEDVEFCILNGT
EDHSKSELEKGVARCGGIAVQNPGRDTYCVVAGVENMRVKNLILSDQHDVVRAAWLLECL
EQKEVVPWQPRHMIHMSPSTREHFAKEYDVYGDSYFVDSDEGQLREVFGRMRGPDGAAAA
SAWQVEQRCGWDDLPTSLFRPFRVYADAYAVIGDPRSAIPASRLSIRALELRFHGGTVAQ
ALEEGVSHVLVEEETRVADLRAARRSFRKKFKIVRDSWVTESIKAGHLMDDNDYLV
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
gctgcggcccagctctctgttgctgctcaggtcccttttcttcacctctgcaccactttg
gagaaaatccagaaagctaaagcccggcccgacaaatccaagattttgggggatttcatt
gaatcgtggagaaattttcataccgccctccacaaaaattccaaaacgacagactccttt
tatccagccatgcgcctcctcgtcccccagtttgagcgagagcggatggcgtacggtatt
aaggagagcatgttggcgaaactctacattgatgtgttaggtctcccgaagaacggcccc
gaagccaataagctattgaactaccgcgcgccgacgacctcccaaggagaagctggagac
tttgccagcgtggcatactttgttctcaagaagcgatgcaccagccaagggagcctgaga
gtcaaagaagtgaacgacttcctggactctgtggcaattaacaacgcaaacaagaaaaaa
gatcttgtgaaaaaaagtctgctgcatctcatcacccacagctcagctctggagcaaaaa
tggctgataaggatgatcctgaaggacatgaagctcggggtcagcaaagaaactgttctc
caggtcttccacccagactcccctgatctgtacaacgtcaacaccgacctgaacaaagtg
tgccagcagctgcacgacccctccgtgtccctgagcgacgtctctatcgaactcttctcc
gccttcaagcccatgctggcggcggtggcaaatatccgcagcgtggaaaagcagatgggg
aacagccttttttacatccagaccaagctggacggggagcgcatccagctgcacaaagac
ggggacgtgtacaagtacttcagccggaacgcctttgagtacacgcagcagtttggggga
tctcctctgcagggctcgctgactccttacatccataacgttttccagagcaacgtggtc
aactgcatcctcgacggagaaatgatggcctacaacccaaccacggagactttaacgcag
aaaggcagcaaatttgacatcaagaagctgatggacgactccgagctgcagacgtgcttc
tgcgtgtttgacgtgctgctcgtcaacgaccggaagctgggcaaagagcccctgaagaag
cgctacgaggcccttcagacggttttcacgccggttaaaggcaggatccacctggtgtcc
aagagcgatgccaggagcacgcaggaggtggtgaaggccctgaacgaggccatcgacagc
cgggaggagggcatcatggtgaaggaccctctgtccatttacaaacctgacaagcgcggg
gagggctggctgaaaatcaaaccggagtacgtggacggcctgatggacgagcttgacctg
ctgatcgtcggcggctactgggggaaaaggtcggcgcggcgggatgatgtcccacttcct
gccccgaagcccggcgagaagccctcggtgttccacactctctgccgcatcggctccggc
tacaccatgaaggagctgtacgacctgggtttgaaactagccaaacactggaaagtcttc
cggaaaagcgaccctccggcctccattttgtgcggaacggagaagcccgaagtctacatc
gagccgcgcaactccgtcatcatccaggtgaaggcggctgaaatcgtcagcagcgacatg
tacaaaaccagctgcacgctacgcttccccaggatcgagaggatccgggaagacaaggag
tggcacgagtgcatgaccctggcgcagctggagcagttccgcggcaaggcgtctgggaaa
ctggcctcgcggcacctgctcatggatgacgacgacccccagaagaagaagcgcagggtg
ccgttcaagcccaagaaggcggtcgggctcctggaacacttcaaggcccaggacctctcc
ggagtcaggaaagagaccgacatgttcgaggacgtggagttctgcatcctcaacggcacg
gaggaccactccaagtcggagctggagaagggcgtggccaggtgtggcggtattgcggtg
cagaacccgggccgggacacctactgcgtggtcgccggcgtggagaacatgcgcgtgaaa
aacctcatcctgtccgaccagcacgacgtggtgcgggccgcctggctgctggaatgcctg
gaacagaaggaagtggttccgtggcagccgcgtcacatgatccacatgtccccctccacc
cgggagcacttcgccaaagagtacgatgtctacggcgacagctacttcgtggacagcgac
gaggggcagctgcgggaggtgttcggccgcatgcggggcccggacggggccgccgcggcc
agcgcgtggcaggtggagcagcgctgcggctgggacgacctccccaccagcttgttccga
ccgttcagggtttacgcggacgcctacgccgttatcggagatccccggtcggccatcccc
gcctcccggttgagcatcagagcgctggagttgcgcttccacggggggacggtggcgcag
gcgttggaggagggggtctcgcatgttctggtcgaggaggagaccagagttgcggatttg
agggccgccaggcgcagcttcaggaagaagtttaagatcgttagagactcgtgggtgacg
gagtccatcaaggctggccatctgatggacgacaacgactacttagtctga
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