Tetraodon nigroviridis (spotted green pufferfish): GSTEN00026372G001
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Entry
GSTEN00026372G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00026372G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
GSTEN00026372G001
3'-5' decay
Other 3'-5' decay factors
GSTEN00026372G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
PhoH
Mov-10_helical
AAA_22
AAA_16
zf-CCCH_4
TPR_1
AAA_7
SRP54
Motif
Other DBs
NCBI-ProteinID:
CAG06126
UniProt:
Q4RZQ6
LinkDB
All DBs
Position
18
AA seq
1674 aa
AA seq
DB search
MADRRAEKSCEEASRSLIRREYEAVVSHSTDALVVLAPQTQSPGAPLPPSLPSLHSRVLL
YRIAAFLQLKNYDEADEDCKCVLAQEFSRGDFSLQSSLRSMLLDGSLQEVVSILSKALYG
EPMNGIVQKDLTRLKMLLTEIEAINREMAPEYTDEQEEDVQDGWQFRPPPRGVTSSEEYT
LCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYMETLIEK
WMNSLCPDRVLSDYLDGVNVETSASLSVTVSTKKSSYSWTFSLLCKPAKKLYRIALLYDA
HRPHFFISGVSTGDGLQTLPRGCQEWTAGEETALSADNGLDHCVYKVVVGFSTEIFGTFR
QTVVFDFGSEPVLMQRIMVDAASIEDLEHLMTARQQLLLTAMRWDSSCKTIVEFTPNEIL
ADLERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEVSKFNIK
VNLQLVTSFMLTGVKERVYEAVIEEKTKDYIFLRICKDCCIELGLQPDGELQVELQFQLN
RLPLCEMHYALDRVKDNTILFPDVGLVPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTP
ISIFLPPILIIGPYGTGKTFTLAQAVKHILRQDHSRVLICTHSNSAADLYIKDYLHPYVE
AGNQHAKPLRVYFRNRWVKTVHPVVQQYCLISSTQVNFQMPTKEDILRHRVVVVTLSTSQ
YLCQLDLEPGLFTHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSEFAR
ERNLHVSLLDRLYEHYPAEYPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQPSHKD
FYPLTFFTARGEDVQDKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDDGSIGVVSPY
ADQVFRIRAELRKKRLHDVSVERVLNVQGKQFRVLFLSTVRTRYTCKHKQTAIKRKEQLV
EDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHENSS
LHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHHPSSQVLHAHHHPHPQHA
QSASNKQGPQQQQQSPPKGKHANHTEHLPPDGFVQPSPAMLMGNPIRAFTPPLGGTPAGM
GKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPGYQNRFAVDPRLMSHPAAMA
YNFNLLQAQNRGSPIPYSGVAHPSPLGMGQPSPDKELQPDPIRNGRTTSVHQAPAWNRLQ
TPERKTSDMKEKQASYTTQSRSLDTQSEGLVGFPSALLHRKDPSAVQRQLNYHLAPPNPS
FPPHPGSGRAFPPLYPVSRLPFRVSQPQHPGMAPQSQQQQQQQQQLSPVYTGASQNASFF
SGPIPPHRGVQSPTLDGTETAGVEELNNSIRTPMGQAGGLAQHSRVSSFVEDGQDGNLGD
NLDLQGPLALEALSQQQAARLGQWGEMSGTFLQDNIAFPLPQQLAHLAQTGMVRFPPQLL
RANSWGLGASMDDEAIVSASPGPPFASMNPEAPVGLSISVGSLPATQTNPAPTPTIPCTP
KALHQTEEQLKAEATAAQQAHTHSHGSPQHLGQFPPLLPKNKPLRPDAPADAGQGVANLS
KPPTMSYANALRAPPKPRAVRPEQAKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcagatcgttaatcagacgg
gagtacgaggcagtggtcagccacagcacagacgccctggtggttcttgcgccccaaacc
caatctcctggtgcccctcttccgccgagtcttccatccctccacagccgcgtcctgctc
taccgaatcgctgcctttttgcagctgaaaaactacgatgaagcagatgaagactgcaaa
tgcgttttggcacaggagttttccaggggtgacttttccctacaaagcagcttgcgctcc
atgttactggatggcagcctgcaggaggtggtcagcatcctctccaaagccttatatgga
gagccaatgaatgggatagttcagaaggacctgaccagattgaaaatgctcctcacagaa
atagaggctataaatagagaaatggcaccagaatacacagatgagcaggaggaagatgtt
caagatggctggcagtttcggcctcctcctcgaggagtcacgagcagcgaggagtacaca
ctgtgtaagaggtacttggagcagggtctgtgtcgctatggggcccagtgtacctcagcc
cactcgcaggaagagctgatggaatggcagaagcgctacgcttcacgcctcatccgcctc
aaacagcagcaggagagcaaacacttcaccgagaactacatggagaccctgattgagaag
tggatgaattccctctgcccagatagagtgctaagtgattacttagatggggtgaatgtt
gaaaccagcgccagcctttctgttactgtttccacaaaaaagtcctcctactcctggacc
ttctcattgttgtgcaagccggctaaaaagctgtaccgcatcgccctgctctacgacgct
caccgaccacacttcttcatctctggtgtgtcaactggtgatggactacaaactctccca
cgaggctgccaagagtggactgcaggagaagagacggcattgtctgcagacaacggcctg
gaccactgtgtctacaaggtcgtagtgggcttcagcacagaaatctttggtaccttccgc
cagactgttgtttttgactttggttcagaaccggtgctaatgcagcggataatggtggat
gctgcttcaattgaagacctggaacacttgatgacagccaggcagcagcttttattgact
gcaatgcgctgggattcttcctgcaagaccatcgtagaattcactccaaatgaaattttg
gctgacctggagcgcagccttctgtcccgctatcagattcctctgtcagcagaccagctc
ttcacccagtctgtcctggacaagactctgaccaaagacaactaccaggctcgactgcac
gacctgctctatatcgaggagattgctcaatacaaggaagttagcaagttcaacatcaaa
gtgaatctccagttagtgaccagcttcatgttaactggagtgaaggagcgagtgtatgag
gctgtgattgaggagaagacaaaggattacatcttcctaaggatctgcaaggactgctgt
attgagcttggcttgcagcctgatggtgaactccaggtggagctgcagttccagctgaac
agactgccactctgcgagatgcactacgccctggatcgcgtcaaggataacaccatcctt
tttcctgacgttggcttggtccccaccattccgtggagccctaacaggcagtgggacgag
cagctggacccccgtctgaatgcaaagcagaaagaagccatcctggcgatcaccacaccc
atctccatttttctgcccccaatcctcattattgggccctacggcaccggcaagaccttc
accctggcgcaggctgtcaagcacatcctccgccaggaccacagcagggtcctgatctgt
acccactccaacagtgcagctgacctttacattaaggattatcttcatccttatgttgaa
gcaggcaatcaacatgccaaacctctcagggtatatttcaggaaccgctgggtgaagacc
gtccacccagtggtccagcagtactgtctgatctccagcacacaggtcaatttccaaatg
cccacaaaggaggatatcctcaggcatcgtgtggtggtcgtcaccctcagcacttcccaa
tatctctgtcagcttgacttggagcctgggttgttcactcatatactgttggatgaagct
gcccaggccatggagtgtgaaaccatcatgccttttgctctagctagcaagagcacccgc
atcgtgctagctggagaccatatgcagctgagtccgtttgtgtacagcgaatttgcacgg
gagcgcaatctgcacgtgtctctgctggaccggctgtatgagcactatcctgcagaatac
ccatgtcgcattctcttgtgtgaaaactaccgctcccacgaagctatcatcaactacaca
tcagagttgttttacgatgggaagctaatggcaagtgggaagcagccctctcataaggac
ttctacccactgaccttcttcacggccagaggagaggacgtgcaggataagaacagtact
gcttactacaacaatgctgaggtttttgagattgtggagcgagtggaggagttgcgcaaa
aaatggcccgtggcctggggcaagctggacgatggcagcatcggagtggtgtcaccatat
gccgatcaggtgtttcgcattcgtgctgagttacgaaagaaaagactgcatgatgtcagt
gtggaaagagtcctgaatgtccaaggcaaacagttccgtgtgctgttcctcagcaccgtg
cgaacgcgatacacttgtaagcacaagcagacggccatcaaacgcaaagagcagcttgtt
gaagactcaacagaggaccttgattatggatttctgtccaactataagctacttaacacg
gccatcaccagagctcagtccttggtcgcagttgtgggagacccaatcgcactgtgctca
gtgggacggtgccgaaaattttgggagcactttatctccatctgccatgaaaactcaagc
cttcatggcatcacctttgagcagatcaaagctcagctagaggctttggagctcaagaag
acctacgtcctgaatccactggcgccagagttcattcctcgggccctcaggcccctgcaa
ggacatcacccgtcttcacaagttcttcatgcccaccatcatccacatcctcagcatgca
cagtctgccagcaacaagcagggtccgcagcagcagcagcagtccccaccgaaggggaaa
catgcaaaccacaccgagcaccttccaccagatggatttgttcaacccagccctgccatg
ttgatgggaaaccctattcgggctttcacaccacctttgggtggaacacctgctggcatg
ggcaagtctcccagtcctgttcagaggatcgatccacacacaggtgccagcatcctgtat
gttccagccgtgtacggtggaaacatggtcatgtccatgcctctgcctttgccttggcca
gggtaccagaaccgctttgctgtggatcctcggctcatgagccacccggcagccatggcc
tacaacttcaacctgctgcaggcccagaatcgtggctcgccgatcccttacagcggggtt
gctcacccttctcctctcggaatgggccaacccagccccgacaaggagctacagccagac
cccatcaggaatggtaggaccacctcagtgcatcaggctcctgcttggaaccgtctccag
acaccagaaaggaagacctcagacatgaaggaaaaacaggcaagctacacaacccaaagc
agaagtttggacactcagtccgaaggtctggttggatttcccagtgcacttcttcaccga
aaagacccctcagctgttcaaagacaactcaactatcacctcgcccctcccaatccttct
tttccaccacacccgggcagcggaagagctttccctccgctgtatccagtctccaggctt
cccttccgcgtcagccagcctcaacatccgggaatggctccacagagtcagcagcagcag
cagcagcagcagcagcttagccccgtttacactggagctagccagaatgcttcttttttc
agcggccccataccccctcacagaggggtccaatcaccaactctggatgggacagagact
gcgggggtggaggaactaaacaactccatccggaccccaatgggtcaagcagggggcctg
gcacagcatagcagggtcagcagctttgtggaagatggacaggatggaaacttgggagat
aatctggatctccaggggcccttggccctcgaagcactgagccagcagcaggccgccagg
cttggccagtggggggaaatgtccggaacatttctccaagacaacattgcgtttcctctg
cctcaacaactcgcccaccttgcccagaccggcatggttcgctttcctcctcagctcctg
cgggctaatagctggggcctgggggccagtatggatgatgaagcaatcgtttctgcctcg
ccggggccgcctttcgctagtatgaacccagaggccccggtcggcctctctatcagcgtc
ggatctcttccagctacccagacgaaccctgccccaacacccacaatcccctgcactccc
aaggctcttcatcagacggaggagcagcttaaagctgaggcaaccgcagcgcaacaagcc
cacacacactcccacggctcccctcagcacctcggacagttccccccgctcctgcccaaa
aacaagccgttacgaccagacgctcccgctgacgccggtcagggggtggcaaacttaagc
aaaccccccaccatgtcctatgccaacgccctccgcgctccacccaaacccagagccgtt
cgcccagaacaggcaaaaaagaacagcgaccctctgtccctgctacaggagctgagtata
ggtagttcaaatggtagcaacggctactactcctattttaaa
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integrated database retrieval system
