Tetraodon nigroviridis (spotted green pufferfish): GSTEN00029904G001
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Entry
GSTEN00029904G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00029904G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tng03041
]
GSTEN00029904G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSTEN00029904G001
Spliceosome [BR:
tng03041
]
Complex A
U2 snRNP components
U2 related factors
GSTEN00029904G001
Complex B
GSTEN00029904G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-ProteinID:
CAG08808
UniProt:
Q4RS24
LinkDB
All DBs
Position
7
AA seq
1046 aa
AA seq
DB search
RHYRKRSTSRGRTGSRSKSRSPDKRSKKDDRDRSRRERSRSRDRRRSRSRDRKRARRSRS
RDRRRSRSRERRRSSSRTRTRRSRSGSPSKSRRDENSKSKEKDNVEPVSEKKKVKEEKED
EKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWSLEDD
DEGEEKEKDIPMELEAEDDVDPLDAYMEEVKQEVKKFNIGAMKGNDKKGAMTVTKVVTVV
KTKKGPNMHKKKGELMENDQDAMEYSSEEEEVDLQTALTGFRTKQRKVLEPVDHEKIQYE
SYRKNFYVEVPELAKMSQEDVNAYRLELEGIIVKGKGCPKPIKTWVQCGVSMKILSALKK
HTYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPIAV
IMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM
LGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDSVRPDRQTVMFSATFPRAMEA
LARRILNKPIEVQVGGRSVVCSDVEQHVLVIEEDNKFLKLLELLGHYQERGSVIIFVDKQ
EHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVATSVAARGLDVKQLI
LVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGSSVPPEL
EQLWVSFKDQQKAEGKIIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDG
ALDIEEQIESMFNSKKRVKDMSAPGAAPGAAGAAASPAAGATGALPGFGPTSAGNIQKLE
MAKRLALKINAQKNLGAEAQVGFQASASVGGGTINLKHAFAACVQDVMQQATNAILRGGT
IMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQVETVTRYEEELEINDFPQTA
RWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKTEI
TRLIKEELIRLQNSYQPISKGRYKVL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
agacactacagaaaacgttccacgtctcggggacggacgggtagccggtcgaagagtcgc
tctccggacaagcgctccaagaaagacgaccgagaccgcagcagaagagagcggtcacgg
agccgggaccgccgccggtcccggtccagggacaggaaaagagccaggcgctccaggagc
agagacaggcggaggtccagaagccgggaaaggagacggtccagcagccgaaccagaact
cggaggtcccggtctggcagccccagcaagagcagaagagacgagaattcaaaaagcaaa
gagaaagacaatgttgagcccgtatctgagaagaaaaaggttaaggaagagaaagaagat
gaaaaggttgaagatcaagactttgaccagaataagctggaagaagagatgagaaagaga
aaggagcgtgtggagaagtggagggaggagcagagaaagaaggctatcgaaaacattgga
gagatcaagaaggaactggaagagatgaagcagggaaagaaatggagcctggaggatgat
gatgagggggaggagaaggaaaaagacattcctatggagctggaggctgaggacgatgtg
gatccactggatgcctacatggaggaggtgaaacaggaggtgaaaaagtttaacattggt
gccatgaaaggcaacgacaagaaaggagcaatgaccgtcaccaaagtggtaacagttgtc
aaaaccaagaaagggcctaatatgcataagaagaagggagagctgatggaaaatgaccag
gacgccatggagtactcgtcagaggaggaggaggtggatctacagacggctctcaccggc
ttccggaccaaacagaggaaagtcttggagccggtcgatcacgagaagattcaatacgag
tcctaccgtaaaaacttctacgtggaggtccctgagctcgccaagatgtctcaagaggat
gtgaatgcatacagactggaactggaaggcatcattgttaaaggcaagggctgccccaaa
cccatcaagacctgggtgcagtgtggagtttcaatgaagatcctcagcgccctgaagaag
cacacctatgagaagccaacgccgatccaggcccaggcaatcccagctgttatgtccggc
agagacctcattggcatcgccaagaccggcagtgggaaaacaatagccttcctcctgccc
atgttccgacacatcatggaccagcggccgctagaggagtcagagggacccatagctgta
attatgactccgaccagagagttggccctgcagatcaccaaggagtgcaagaagttctcc
aaacctctgggcctcagggtggtgtgtgtttatggaggcaccggcatcagtgaacagatt
gccgagctgaagagaggagccgagatcatcgtgtgcacgccaggaagaatgattgacatg
ttgggggccaacagtgggcgagttaccaacctgcgtcgggtcacctacgtggtgctggat
gaagcagaccggatgtttgacatggggtttgagccgcaggtgatgcgtatagtggacagt
gttcggccggaccgtcagacagtcatgttttcggccaccttccccagagccatggaggca
ctggcccgtagaatcctgaacaagcccattgaggtccaggtggggggtcgcagcgtggtt
tgctctgacgtggaacagcacgtgttggtgattgaagaggacaacaaattcttgaagctg
ctggagcttctgggccactaccaggagaggggctcggtcattattttcgtggacaagcag
gagcatgcagacggcctgttaaaagacctgatgaaagcctcctacccctgcatgtcgctg
cacggaggaatcgatcagtacgaccgagacagcatcatcaacgattttaagagcggagct
tgtcgcctgatggtggccacctctgtggcggccagaggtctggacgtcaaacagctgatt
ctggtggtcaactacaactgccccaaccactatgaggactacgtccacagggccggacgc
acgggccgagcaggcaacaagggctttgcctacaccttcatcacagaagaccaggcccgc
tacgctggggacatcatcaaagctttggagctgtcgggctcttcggtcccacctgagctg
gaacagctctgggtgtcatttaaagaccagcagaaagcggagggtaaaatcatcaagagc
agcagtggtttctcaggaaaaggctttaagtttgatgagacggaacacgccctggccaac
gagaggaagaagctgcagaaggctgctctgggcctgcaggactcggacgatgaagatgga
gctctggatatcgaggagcaaatcgaaagcatgtttaattccaagaagcgggtgaaggac
atgtcagctcccggggccgccccaggagctgccggggctgccgccagcccagcagccgga
gccactggagcacttccgggcttcggacccacctcagctggaaacatccagaaactggag
atggccaagaggctggcgctcaagatcaacgcccagaagaacctgggggccgaggctcag
gtcggttttcaggcttctgcgtctgttggtggtggaaccataaacctgaaacacgccttt
gctgcttgcgtgcaggacgtgatgcagcaggccaccaacgccatcctgcggggcggcacc
atcatgacaccctccgtgtcagccaagaccatcgcagagcagctggcggaaaagatcaac
gccaagctgaactacacccccgtggagaagctggaggaggagcggcaggcggccgaacag
gtggagacggtcaccagatacgaggaagagctggagatcaacgacttccctcagaccgct
aggtggaaggtgacgtcgaaggaagccctgcagagaatcggcgaatattctgaagctgcc
atcaccatcaggggaacctatttccctcccggcaaagagcccaaagaaggagaacgcaag
atctacctggctattgaaagcgcaaatgaattagctgtgcagaaagctaaaacggagatc
accaggctaatcaaggaggagctcatccgattacaaaattcctaccagcccatcagcaaa
ggccgttacaaagtgttgtag
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integrated database retrieval system
