Thioalkalivibrio nitratireducens: TVNIR_2396
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Entry
TVNIR_2396 CDS
T02408
Symbol
rhlE_[H]
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tni
Thioalkalivibrio nitratireducens
Pathway
tni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVNIR_2396 (rhlE_[H])
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tni03019
]
TVNIR_2396 (rhlE_[H])
Enzymes [BR:
tni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TVNIR_2396 (rhlE_[H])
Messenger RNA biogenesis [BR:
tni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TVNIR_2396 (rhlE_[H])
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGA34039
UniProt:
L0DWQ9
LinkDB
All DBs
Position
complement(2459207..2460727)
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AA seq
506 aa
AA seq
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MSVAILFLEYVSFLIHSPYAAAHRTPRPSASVHPIVSITPISSASMGASPRWSGGPPLEM
SMSAVSPFASLGLADPLLRALAEAGYAAPTPIQAKAVPEILRGRDLLAAAQTGTGKTAAF
TLPILQRLSERSAAAARAGRPRCLVLTPTRELAAQVQASVTDYGRYLKMRSMVVFGGVNI
NPQIKALRGPMDIVVATPGRLLDHVGQKTLDLSGIEILVLDEADRMLDMGFIHDIRRILK
LLPGKRQNLLFSATFSDEIRRLSDGILNSPVQVEVAPRNTASELVRQSVHLVQSDQKRDL
LSHLIRKHSWEQVLVFTRTKHGANRLADKLSKDGIPAAAIHGNKSQAARTKALDQFKSRR
IPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSAGSALSLVDAGELK
LLSGIERLIRRPIDRVQTEGFEAPAVSVGAAASRPNSAAGRGAPKAAPRSARSGNPGKGP
RPGNAGARRPPRGTGRGGASRGTRAR
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcgcgattcttttcttggaatatgtttcttttctgattcattccccgtatgct
gcagcgcatcgaacgccccgcccgtcggcgtccgttcacccgatcgtttcgatcaccccg
atttcgtctgcctcgatgggcgcctctccccggtggagtggcgggccgccgttggagatg
tccatgtctgctgtttccccgtttgccagcctcgggttggccgatcccctgttgcgcgca
ctcgccgaggccggctatgcggcgcccacgccgatccaggccaaggccgttcccgagatc
ctgagaggccgggatctgctcgccgccgcccagaccggcaccggcaagaccgctgcgttc
acgctgccgatcctgcaacggctgtccgagcggtcggcagcggccgcccgtgccggccgc
ccgcgctgtctggtgctgaccccgacgcgcgaactggcggcccaggtccaggcgtcggtc
accgactacggccgctacctgaagatgcgctcgatggtcgttttcggtggagtgaacatc
aatccccagatcaaggcgctgcgcgggccgatggacatcgtcgtcgcgaccccgggccgc
ctgctcgaccacgtgggccagaaaaccctcgacctgtccggcatcgagatcctggtgctg
gacgaggccgatcggatgctggacatgggcttcattcacgatatccgtcggatcctgaag
ctgctccccggcaagcgccagaacttgctgttctcggcgacgttctccgacgagatccgc
cgcctgtccgacggtatcctgaacagcccggtccaggtcgaagttgcgccgcgaaacacc
gcttccgaactcgtgcggcagtccgtccacctcgtccaatccgaccagaaacgcgatctc
ctgagccatctgatccgcaagcacagctgggagcaggtgctggtgtttacgcgtaccaag
cacggcgcgaaccggctcgccgataagctctcgaaagacggcatcccggccgccgcaatc
cacggcaacaagagccaggctgcgcgcaccaaggcgctggaccagttcaagagcagacgg
attccggtgctggtggccaccgacattgccgcacgcgggttggatatcgaccagttgccg
caggtggtcaacttcgagctgccgaacgtacccgaagactacgtgcaccgcattggccgt
accggccgtgcgggcagtgccggttctgcgctgtcgctggtcgatgccggcgagctgaaa
ctactctccggaatcgagcgcctgatccggcgtccgatcgaccgggtccagaccgagggg
ttcgaggcgcctgcggtgtctgtcggggccgctgcgtcccgtcccaacagcgctgccggc
cgcggcgcgccgaaggctgcgccccgcagcgcccggtctggtaatcccggcaaggggccc
cggcctggcaacgcgggcgcccggcgcccgccacggggcaccggccgcggtggtgcgtca
cgcggcactcgcgcccgctga
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