Trichoplusia ni (cabbage looper): 113496752
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Entry
113496752 CDS
T05757
Name
(RefSeq) histone deacetylase Rpd3-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03082
ATP-dependent chromatin remodeling
tnl03083
Polycomb repressive complex
tnl04213
Longevity regulating pathway - multiple species
tnl04330
Notch signaling pathway
tnl04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113496752
03083 Polycomb repressive complex
113496752
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113496752
04350 TGF-beta signaling pathway
113496752
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
113496752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tnl03036
]
113496752
Enzymes [BR:
tnl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113496752
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113496752
HDAC complexes
Sin3A-HDAC complex
113496752
BRAF-HDAC complex
113496752
REST complex
113496752
SHIP complex
113496752
MiDAC complex
113496752
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113496752
Heterochromatin formation proteins
Other heterochromatin formation proteins
113496752
Chromatin remodeling factors
NuRD complex
113496752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113496752
NCBI-ProteinID:
XP_026731879
UniProt:
A0A7E5VU84
LinkDB
All DBs
Position
1:complement(14340768..14346921)
Genome browser
AA seq
486 aa
AA seq
DB search
MAMQPHSKKRVCYYYDSNDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
TADEMTKFHSDDYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVA
AAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDSYES
IFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGRCVELVKRFGLPFLLVG
GGGYTIRNVSRCWTYETSVALGVEIANELPYNDYFEYFGPDFKLHISPSNMSNQNTQEYL
EKIKNRLFENLRMLPHAPGVQVQAIPEDAVNDESEDEDKVDKDERLPQSDKDKRITGDGE
LSDSEDEGEGGRRDNRSYRTPQPRKRPRLDKDGSQIKDEIKSEDTKDDVKNLSSVEEPKK
EIPPNP
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgcaaccgcatagtaagaaaagagtgtgctactactatgacagtaatgacatc
gggaactattattacggtcagggacatcctatgaaaccgcaccgtatacgcatgactcat
aatttactattaaattatggattgtaccggaaaatggagatatatagaccccataaagca
accgctgatgagatgacaaaattccattctgatgattatattcgcttcttacgatcaatc
aggccagataatatgtccgagtataacaaacagatgcaaagattcaatgtcggtgaagat
tgtccagtgtttgatggtctctatgagttttgtcagctgtctgcaggtggatcagtggct
gcagctgtgaaattaaataaacaggcttctgagatttgtatcaattggggaggaggactt
caccatgccaaaaaatcagaagcctcaggcttctgttacgttaatgacatagtacttgga
atcttagagttgctgaagtaccaccagagggtgttgtacattgatattgatgtccaccat
ggtgatggggttgaggaagccttctacaccactgatagagttatgacagtgtctttccat
aaatatggagagtacttccctggaactggcgacttacgtgatattggtgctggaaaaggc
aagtactacgcagtaaacatacccctgcgcgatggaatggacgacgactcttatgaatcc
atcttcgtgcctatcatatcaaaagtcatggagactttccagcccagtgcggttgtcctg
cagtgtggagctgattcactgacaggtgacaggttaggttgtttcaatcttactgttcga
ggtcatggccgatgtgttgagttagtgaagaggtttggcctacccttcttgctagttgga
ggcggaggttacacaattcgtaatgtgtcacgttgttggacctatgaaacatcagtggcc
cttggggtcgaaatagctaatgagttgccttacaatgattactttgaatacttcgggcct
gacttcaagctacatatttcacccagcaatatgtctaatcaaaatacacaggagtattta
gaaaaaattaaaaataggctctttgagaatctgagaatgttaccacatgcacctggtgtt
caggtacaagctattcctgaagatgctgtaaatgatgaatctgaagatgaagacaaagtt
gacaaagatgaaagactgccacaaagtgataaagacaagcgcatcacgggagacggcgag
ttatcggactcagaagatgagggagagggaggccgccgcgacaaccgctcctaccggacg
ccgcagccgcgcaagcgaccgcgcctcgataaggacggctcgcagatcaaggatgaaatc
aaatctgaagacacaaaagacgacgtcaaaaacttaagcagtgttgaagagccaaagaaa
gaaatacctccgaatccctga
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