Trichoplusia ni (cabbage looper): 113501999
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Entry
113501999 CDS
T05757
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03022
Basal transcription factors
tnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113501999
09124 Replication and repair
03420 Nucleotide excision repair
113501999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113501999
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113501999
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113501999
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113501999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
113501999
NCBI-ProteinID:
XP_026739153
UniProt:
A0A7E5WEM2
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Position
2:296171..299900
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AA seq
476 aa
AA seq
DB search
MTESSKSKSSSLNLNPSPTLQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARH
FVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKSCEALSELLVWQEAPIPGGMPGWMLAQSF
KKNLKVALLGGGRPWSMSSSLEPDGKARDVAFLDAYALERWECVLHYMVGSAQTEGISAD
AVRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTSKQVWLFLQHYLHTAEKRSLSAAECL
AFLYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLVYQRKRKAGRFYPTRLALNMARGD
STGPPAGVGPGAARGYILVETNYRVYAYTQTSLQVALLGLFTELLYRFPNLVVGVLTRES
LRAALRGGITAAQVLRYLQQHAHPRLLAAEPGAQPGLPPTVVDQIKLWESERNRFTYTEG
VVYNQFLSQADFVVLRDHAKLQGVLTWQNERSRTMVVTRQGHDDVKKFWKRYSKTS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatcatcaaaatcgaagtcttcttctttgaacttaaatccgtcacccacttta
caatgtaaagatcttcacgaatatctaaaaagtcgttccccgcagtttttggagactttg
tacaactatcctacgatatgtttagctgtataccgagagttgccggagttggctcgtcat
ttcgtcatccgactgctgtttgtggagcagccggtaccacaggcggtcgtcacatcctgg
gtttctcagacatatgcaaaggagcaggcaaagtcatgtgaggccctgtcagagctgctg
gtgtggcaggaggcacccattcctggtggcatgccaggctggatgctcgctcagtcattt
aagaagaatctcaaagttgctctgcttggaggtggccgcccatggagcatgtcttcatca
ttagaacctgatggcaaggctcgtgatgtggctttcttagatgcgtatgcactggagagg
tgggagtgtgtgctgcactacatggtgggcagtgctcagacagagggcatcagtgctgat
gctgtgaggatcctgctacatgctggactcatgaccagagatgcggaagatgggtcggca
gtgattactcgcgccggattccagttcctcctgctgagtacttctaaacaggtgtggttg
tttctgcaacactacctccacacggctgagaagcgcagtctgagcgcggcggagtgcctc
gccttcctgtatcaacttagttttagtacactcggaaaggattatagcactgaaggaatg
agcaacaacatgctggtgtttctgcaacacctcagggagtttggacttgtataccaaagg
aagcgcaaggccgggcgcttctacccgacgcggctggcgctgaacatggcccgcggggac
tcgacgggcccgccggcgggcgtggggccgggcgccgcgcgcggctacatcctggtggag
accaactaccgcgtgtacgcctacacgcagaccagcctgcaggtggcgctgctggggctg
ttcacggagctgctgtaccgcttccccaacctggtggtgggcgtgctgacgcgcgagtcg
ctgcgcgcggcgctgcgcggcggcatcacggcggcgcaggtgctgcgctacctgcagcag
cacgcgcacccgcgcctgctggccgccgagcccggggcccagcccggcctgccgcccacc
gtcgtcgaccagatcaagctctgggagagcgagcggaaccgcttcacctacaccgagggc
gtcgtctacaaccagttcctgtcgcaggcggacttcgtggtgctgcgcgaccacgcaaag
ctgcagggtgtgctgacgtggcagaacgagcgctcacgaaccatggtggtcacccgccag
ggacatgatgacgtcaagaagttctggaagcggtactccaagacatcctag
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