Thermotoga petrophila RKU-10: Tnap_1361
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Entry
Tnap_1361 CDS
T01139
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tnp
Thermotoga petrophila RKU-10
Pathway
tnp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tnap_1361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnp03400
]
Tnap_1361
Enzymes [BR:
tnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tnap_1361
DNA repair and recombination proteins [BR:
tnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tnap_1361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
SecA_DEAD
AAA_30
DctP
ERCC3_RAD25_C
AAA_16
AAA_25
UB2H
IstB_IS21
AAA_5
RecG_dom3_C
Chordopox_RPO7
AAA_19
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ADA67446
UniProt:
D2C3Z2
LinkDB
All DBs
Position
complement(1356744..1359425)
Genome browser
AA seq
893 aa
AA seq
DB search
MVEILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATT
LKALTEKVFSPDFLRENSLMITRSTKLTLSPERLVEMGYERVFTVQNVGEFAIRGDIIDI
YSPGNDFPVRIELFGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDV
RFICEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKKE
SLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKYEDAVLYVPIEKIDR
VHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPEL
EEKFAESFPYIETPDQQQSIEEVLYDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSG
KQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIG
THSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSG
MKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKL
KRMFPELEIAVAHGKMSRRTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAH
RYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDME
LRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFREGRIEKKHSVNVEIENPPGRFFIP
EDYVQNPVERLRFYRRLASSLAEEDLEEILEEMKDRFGEPPTEVKLLVDYFRLRIRASKL
GVKKIRFDHSMVEIFPNRDSPFLNHPRYNRRSGSVVLYTRENPVEFLMDLMKK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggttgagattcttctgctgccgaacgaaagattttcgaatatagaaggatacattttc
tatccttcgagagatgttttgcctctcgaagatgttgttttgtcacccgagataaaagga
aaaagaatagaaatcctgtggaggcttctaaacggagagaacatcaagatagccactacc
ctgaaagcgctcaccgaaaaggtgttctcacccgattttctgagagaaaactccctgatg
ataacaagatccacaaagctcacattgtccccagaaagactcgtcgaaatgggatatgaa
cgtgttttcactgttcagaacgtgggagaatttgccattcgcggagatataatcgacatt
tactctccagggaacgactttcctgtgaggatagagctgttcggggacgaaatcgaagaa
atccgtttcttcaaggtagacacccagcgttcatttcagagtgctgacaagactctgata
cttccttttgttgatttatacggtgaaagcaccttgcttgatttcgtaaaaacggatgtt
cgcttcatctgcgaagatcttcaaaaggttctggatgaatacagaaagttcaggaaagaa
atgagggaccttttgaaggaacgctacaacgacttcttcgatgaaagagtagtcgaagtg
gtactcaaaaacgttgaaaaagcttccgtatcgttatcaacacgtattgagaagaaagaa
tcgctgcccattctggatgtcgatgagatcgaagagggtggactcgtagttcacagagaa
cacggaatagcgattttcgaaggggttgttcggctcaagggagttctcggagagagggat
tatttgaagttgaaatatgaagacgcagttttgtacgttcccatcgagaagatcgacaga
gttcataaatacataggtgatccttcgcaggtcaaactcgaccggatgaaccgcggaaaa
tggaaacaaacactgaagaaagtgagagaagacatcgagaaaaagatcagagaactcgtt
gaactttacatgaaaagacaggaggcccagggtctttctcttccaggtgacccagaactg
gaagaaaaattcgcggaatcttttccatacattgaaacccccgatcagcaacagagtata
gaagaagtgctgtacgatcttgcctctgaaaaaccaatggacagactcctgtgcggagat
gcgggtgttggaaaaacagaagtggctctgcgagctgcgttccgtgcagttgtatctggt
aaacaggtagcggtgcttgtaccaaccaccgttctggcaagacaacactacgagaacttc
aaagagagaatggaaacgttcggtgtaaaagtagaactcctggacagttcaagaacagcg
agagaaaagaaggagatcatcgaaaagctgaagaagggagaaatagacatcatcataggt
acgcattctttgctgaatgaaagaatcgaattctccgatcttggtcttgtcatcatcgac
gaagaacaaaagtttggagttgagcaaaaagaaaggttcaagaaactgagactctcggtg
aacgtgctaaccctgagtgctacacctattccacgcaccctccacatggccctctctgga
atgaaagatttttctgtgataaattctcctccccctggaagaaaaccagtatacgtttat
gtcgcagagtacagcgatgatctcgtcaagggagcggtgatcagggagataaacagggga
ggtcaggtgatctacgttcacaaccgcgtggaagaactaccggaagttttcgaaaaactg
aaaaggatgttcccagagctggaaatagcagtcgcccacggaaagatgtctagaagaact
atggagagaattgtccacgagttctaccgtgggaacatcgatgttcttctgtgtaccaca
attatcgagaatggtgttgatataccgaacgccaacacactcatagtggacgacgcacac
agatacggcctttcacagctttatcagctcagaggaagggtgggtagaagcgaccgaagg
gcctttgcgtactttctgtatccgaaaggtactccaagaagcgctcttgaaagactgaag
gtgctcaaatcctacacgggcttcggaagcggtcttcaaatagcgttgaaagatatggaa
ctgagaggtgtgggagatgtcctcggtttggaacagcatggaaatgttgtgtccgtcggt
ttgaaactgtacaacgaaattttgaaagagaccataacgaggttcagagagggacggatc
gaaaagaaacactctgtgaacgttgaaatagaaaatcctccgggcagatttttcataccg
gaagattacgtgcagaatcctgtggagaggttgagattctacagaagactcgcatcctct
ctcgctgaggaagatctcgaagaaatactggaggagatgaaggatagattcggagaacca
cccacggaagtgaaattactcgttgattacttcagattgaggatcagagcttcgaagctg
ggagtaaagaagatcagattcgatcactcaatggtggaaatctttccaaacagagactcg
ccgtttttgaatcatccgagatacaatagacggtcgggaagtgttgttctctacaccagg
gagaatccggtggagtttctcatggatttgatgaaaaaatag
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