Thermodesulfobium narugense: Thena_0276
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Entry
Thena_0276 CDS
T01488
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tnr
Thermodesulfobium narugense
Pathway
tnr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thena_0276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnr03400
]
Thena_0276
Enzymes [BR:
tnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thena_0276
DNA repair and recombination proteins [BR:
tnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thena_0276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEE13924
UniProt:
M1E7C9
LinkDB
All DBs
Position
complement(291646..294981)
Genome browser
AA seq
1111 aa
AA seq
DB search
MKFLDEFFNSVLEKCTTNYKNKIINIQFETSLFLVHYFAQKNKKALFVYKNEKVSHDAYN
LLKRSSKIDSEEGFNFLLYPAWDILFGERLSPSFRIISQRIIAQKKDAPLISSVKAILSP
KEDNFQRFFLKKNIEIDREELINLLSKNYTRKSLCELPGDFAVRGMLLDVFPFYSEDPIR
LIFSDNTISAIKYFNPEDQRTIKEVDSFNLIVIEALKFLPDEKEKIRKFFNALSKEERDI
ISEEIKNIENDINFSGIENYLYFKNDLQFILDDFDTIFFVDKDQVQSEATRLLQEIEKLR
SFQIENKIYVKMPSFVYKLIGNPENLATKDFNLDERFKIIDFNTELIKPLSKEVKTAPLL
PRGRPEDVKNTLNWYLNANYTVEISMNHIPDYLKDLENTQLIFSERNYPAGIEILGINKE
ITKKYSIKENLIIFTSQEFSTKQTKEKITRHKNISSLQELQYNDLVVHTDHGIGRFIGLK
LMNFTKIQREYAQILYKDGDILYIPVEEFTRLSKYIGPDDAELSSLRSNDWTSKKKRAKD
FAEKIAHEIVFIEASRRNVQRPIYSNSKNPTIEELELKESFGYEETPDQERAIEDVFIDM
SKPYPMDRLIVADAGFGKTEIAIRAAYRAVLASRQVALLAPTTLLADQHYRTFKNRFDPL
GVRVEVLSRISRSGNKNKILEDLKENKIDIIIGTHSLLSKGIKFKNLGLLIIDEEQKFGV
MQKEQFKKLRTELDVLSLSATPIPRTLNMALSGLRDISTIFTPPKNRMPIRTIVSPFKDT
IVREAILRELDRGGQIFVVDARISNLNNLKEKIESIVGNVSCAVLHGQKSPQEISTTLER
FLNKEIDLLISTAILESGLDIPEVNTIIINNADLFGLSELYQLRGRVGRSFKQGYAYFLY
SSDKKITEDAKRRLQTIQMNSALVSGFNISLKDMEIRGTGNVLGTEQHGHMENIGVELFT
EMIAEELARIKGTAKEFTRVRAEIELYIDKNYINEEGLRIDLYKRLQRVDSEEELFSLQE
EIEDRFGKMPKELSNLFLLTLIKLKATKIGIKELSILKDSIKIAPNTTNFLEKIKKNGFF
VKSTKEEIVVRPTSPIDSLGFAISILSSLSS
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttttagatgaattctttaacagcgttcttgaaaaatgcacaacaaactacaaa
aacaaaataatcaacatacaatttgaaacatctttgtttctggtacattactttgcacaa
aaaaataaaaaggctctctttgtatataaaaacgagaaagtctctcacgatgcctataat
ttgcttaaaagaagttcaaaaattgattcagaagaaggatttaattttttattgtatcca
gcatgggatatcctttttggcgaaagactctccccatcttttagaataatctcccaaaga
ataatcgcacaaaagaaagatgccccgttgataagttctgtaaaggctatactttccccc
aaagaagataatttccaacgcttttttctgaaaaaaaatatagaaattgatagagaagaa
ctaataaacttactaagcaagaactatacaagaaagagcctatgtgaattgcccggagat
tttgcagtaagaggaatgcttttagacgttttcccattctactcagaagatccaatcaga
ttaatcttcagcgataatactatcagcgcaataaaatatttcaacccagaagatcaaagg
actatcaaagaagttgatagcttcaatttaattgttatagaagcactaaaatttttacca
gatgaaaaagaaaagatcagaaagtttttcaatgccctatcaaaggaagaaagagatatt
atttcagaagaaataaagaatatagaaaatgacatcaacttttctggcattgagaattat
ctatactttaaaaatgacctacaattcattttagatgactttgacaccatctttttcgtt
gataaagatcaagttcaatcagaagcaacaagacttctacaggagattgaaaaattaaga
agctttcagattgaaaacaaaatatatgtcaagatgccatcctttgtttacaagttaata
gggaatcctgaaaatttggctacaaaggattttaatttggacgagcgcttcaaaataatt
gattttaacacagagctaattaaacctctttcaaaagaggttaaaacagctcctctttta
ccaagaggacgacctgaagacgtaaaaaacactcttaattggtacttaaatgccaattac
acagtagaaatatctatgaatcatatacctgactacttaaaagacttggaaaacactcaa
ttaatattttcagagagaaattatccagcaggcatagagatattaggtataaacaaagaa
ataacaaaaaaatacagcatcaaagaaaatttaataatctttacctcacaagagttttct
acaaagcaaacaaaagaaaaaataacaagacataaaaatatatctagcctccaggaactt
cagtacaacgatctggtagtgcacacagatcacggaataggaagatttatcggattaaag
ctcatgaactttaccaagattcaaagagaatacgcgcaaatcctatacaaggatggcgac
atcctatacatccctgttgaagaatttaccagactatcaaaatatattggtccagacgat
gcagaactttccagtttaaggtcgaacgattggacttcaaagaaaaaaagagccaaagat
tttgcagaaaaaatagctcatgaaatagtttttatagaagcttcaagacgaaacgttcaa
agaccaatatattcaaatagcaaaaaccctacaatagaagaattagagctgaaagagagt
tttggctatgaggaaaccccagatcaagaaagagctattgaggatgtttttatagatatg
tcaaagccatacccaatggatagattaatagtagctgatgctggcttcggaaaaacagaa
atagcaataagagcagcatatagggcagtgttagcatcaagacaagttgcgttacttgct
cctaccacactattagccgatcaacactatagaactttcaaaaatagatttgaccccctt
ggggtaagagtagaagttttgtcaaggatttccagatcaggaaacaaaaataaaatccta
gaagatttgaaagagaataaaatagatatcattattggaacacactcgctattgtcaaaa
ggtataaaatttaaaaatttgggtttattaattatagatgaagaacaaaagtttggcgtc
atgcaaaaagaacaattcaagaagttaagaacagaactggatgtgttgtctttatctgca
acgcctatacccagaactttaaatatggcattaagcggcctaagggatatatcaaccatc
tttaccccaccaaaaaacagaatgccaattcgaacaatagtctcaccctttaaagacaca
attgttagagaagccatattaagagagcttgacagagggggtcaaatttttgtcgtcgat
gcaagaatttctaatttaaataatttgaaagagaagatagaaagtatagtaggaaatgtt
agttgtgcagtattacatggtcaaaaaagccctcaagagatatcaacaaccttagaaaga
tttttaaacaaagaaatagaccttctcatatcaacagcaatattagaatctggcttagat
atcccagaggtaaataccataattataaacaacgcagatctatttggactttctgagctt
tatcaactaagaggcagggtaggtaggagtttcaaacaaggttatgcatactttttatac
agttctgacaaaaagattacagaagacgcaaaaagaagattacaaaccatccaaatgaac
tctgcactagttagcggttttaatattagtctgaaagacatggaaataagaggaactgga
aacgtattgggaacagaacaacacgggcacatggaaaatattggagttgaactattcaca
gagatgatagcagaagagcttgcaagaataaaagggacagccaaggaatttactagggta
agagctgaaattgaactctatatagacaaaaattatataaacgaagagggattaagaatt
gatctttacaaaaggcttcaaagggttgacagtgaagaagaacttttttcattgcaagaa
gaaattgaagacagatttggaaaaatgccaaaagaactatcaaatcttttcttgctgacg
ttaataaaactaaaagccacaaaaattggaataaaggaattaagtatcttaaaagacagc
ataaaaatagctccaaatactaccaactttcttgaaaaaattaaaaagaatggcttcttt
gtcaaatctacaaaagaagaaatagtagttaggccgaccagcccaattgattcattgggc
tttgctatttcaatactttcatcgctctcaagttaa
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