KEGG   Thermococcus nautili: BD01_1570
Entry
BD01_1570         CDS       T03065                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tnu  Thermococcus nautili
Pathway
tnu03030  DNA replication
tnu03410  Base excision repair
tnu03420  Nucleotide excision repair
tnu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tnu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BD01_1570
   03410 Base excision repair
    BD01_1570
   03420 Nucleotide excision repair
    BD01_1570
   03430 Mismatch repair
    BD01_1570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tnu03032]
    BD01_1570
   03400 DNA repair and recombination proteins [BR:tnu03400]
    BD01_1570
Enzymes [BR:tnu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BD01_1570
    6.5.1.6  DNA ligase (ATP or NAD+)
     BD01_1570
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BD01_1570
DNA replication proteins [BR:tnu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    BD01_1570
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     BD01_1570
DNA repair and recombination proteins [BR:tnu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BD01_1570
   NER (nucleotide excision repair)
    Other NER factors
     BD01_1570
   MMR (mismatch excision repair)
    Other MMR factors
     BD01_1570
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase TPR_1 DNA_ligase_OB_2 Tcp10_C
Other DBs
NCBI-ProteinID: AHL23175
UniProt: W8P6M3
LinkDB
Position
complement(1379496..1381175)
AA seq 559 aa
MKYSELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKVFPDWDERELGV
GEKLLIRAVSMATGVPEREIENSIKDTGDLGESVALALKKRKQKSFFSQPLTIKRVYSTF
VKVAEASGEGSQDRKMKYLANLFMDAQPEEGKYIARTVLGTMRTGVAEGILRDAIAEAFK
VKPELVERAYMLTSDFGYVAKVAKLEGNEGLSKVSIQIGKPIRPMLAQNAANVKEALIEM
GGEAAFEIKYDGARVQVHRDGDRVIIYSRRLENVTRSIPEIVEAVKASLKPSKVIVEGEL
VAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVDGESLIDTKFAERRKK
LEESVEESDKIKLAEQLVTKKVEEAEEFYKRALELGHEGLMAKRLDSIYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPESGEFVPVGKVGSGFTDEDLVEFT
KMLKPLIVREEGKFVEIEPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPEEAD
TIERVAQLYELQERFKAKR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaagtactccgagctggccgaactctaccggaggcttgagaagaccacgctcaaaacg
ctcaagacgaagtttgtggcagacttcctcaagaaaacgcccgacgatttgctcgagata
gtcccctacctgattctcggcaaggtcttccccgattgggacgagcgcgagctcggcgtc
ggcgagaagcttctcataagggccgtttcgatggcaaccggcgtccccgagagggaaatc
gagaactcgattaaggacaccggcgatttgggcgagagcgtggctctggctctaaagaag
aggaagcagaagagctttttcagccagcccctcacgataaagcgcgtctacagcaccttc
gttaaggttgccgaggcgagcggagaggggagccaggacaggaagatgaagtacttagca
aatctcttcatggatgctcaacccgaggagggcaagtacatagccagaaccgtcctcgga
acgatgaggacgggcgtcgccgagggaatcctgcgcgatgccatagcggaggccttcaag
gtgaagccagagctcgtcgagagagcctacatgctcacgagcgacttcggctacgtggcg
aaggttgcaaagctcgaggggaacgagggactctcaaaggtcagcatacagattgggaag
ccgataaggccgatgcttgcccagaacgccgccaacgtcaaggaagcgctaatcgagatg
ggcggtgaggcggccttcgagattaagtacgacggcgcgcgcgttcaggtccaccgcgat
ggggacagggtgataatctactcgaggaggcttgagaacgtcacccgctcgattcctgag
atagttgaggctgtaaaggcctccctgaagccttctaaggtcatagtcgagggcgagctg
gttgccgtcggagagaatggtcgtccaagacccttccagtacgtcctcaggaggttcagg
aggaagtacaacatcgaggagatgattgagaagattccgctcgagctcaacctcttcgac
atcctctacgttgatggggaaagcctcatcgacacgaagttcgcagagagaaggaagaag
ctcgaggagagcgtcgaggaaagcgataagataaagctcgccgaacagctcgttacgaag
aaggttgaagaggccgaggagttctacaagagggcccttgagctcggccacgagggcctg
atggcgaagaggctggactccatctacgagcccggaaaccgcggtaagaagtggctgaag
attaagcccacgatggagaaccttgacctcgtcattatcggagccgaatggggcgagggc
aggcgcgcgcacctgctcggctcgttcctcgttgcggcctacgaccccgagagcggtgag
ttcgtcccggtgggcaaggtcgggagcggtttcaccgatgaagatttggtcgagttcacc
aagatgctcaagcccctgattgtccgtgaagagggcaagttcgtcgagattgagcccaag
gtcgtcatcgaggtcacctaccaggagatacagaagagccccaagtataagagcggtttc
gcgcttcgcttcccgcgctacgtggcgctgagggaagataaaagcccggaggaggccgac
accatagagagggtcgcccagctctacgagctccaggagaggttcaaggcgaagcggtga

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