Thermosediminibacter oceani: Toce_0099
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Entry
Toce_0099 CDS
T01289
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Toce_0099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
toc03400
]
Toce_0099
Enzymes [BR:
toc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Toce_0099
DNA repair and recombination proteins [BR:
toc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Toce_0099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
RecG_dom3_C
AroM
AAA_22
AA_kinase
DUF1474
BTRD1
Motif
Other DBs
NCBI-ProteinID:
ADL06890
UniProt:
D9RZJ2
LinkDB
All DBs
Position
102939..106472
Genome browser
AA seq
1177 aa
AA seq
DB search
MDIDFLSREITEFNKLAGDLEKGLSGLFAYGLSDSQRAFLIAAVRKRFPKPVLVVTADSL
DARKLADDLAYFLGTEDVEMFPASSVIPYETAARSPELTAQRLKVMESLVTGKQPVVVSP
LQALTNRMMPPDVVKKFTIKLRVGDSIPLEEAVLKLSFMGYERVDTVEGRGQFAVRGGIL
DVYPLTAENPYRMEFFGDEVDSIREFSVEDQRSMDKLEEVFIFPAREVVFDRETAKNAAI
SIARELEDRKKAFELTGSAQIAAQLEEKILEHIEKLENGQFFESAQHYISHFYSNLSALT
DYFTLPPLVILVEPGKIVESTKNSAFEIEETYKGLLEKGEVLPSVSEMYFTPFDILENLR
KSKTVYISMLPRIPGEFEIGGLYSFQFRSVTSFHGKVDLLAEEVAHFKKKGYRVVILSGT
GERGKHLSRTLREKALDAAFYGTLGDELLPGQVVITPGSLEKGFQIPEIKFALISDLDVY
GQPKIKQKRPKVRAGGKRITSIDELSAGDYVVHITHGIGRYLGIETLEVEGHKKDYFAIQ
YAGGDKLYVPTDQVEMLHKYVGPEDRPPKLNKLGSSEWAKAKTRVKESVKEMAKELLELY
AARQAMKGFAFSPDTVWQKEFEDLFPYEETPDQLTAIEEVKRDMESDKCMDRLLCGDVGY
GKTEVALRAAFKAVMDAKQVAVLVPTTILAEQHYRTFSERFAPFPVRVEVISRFKSKAEQ
KAIIKDLKNGAIDIIIGTHRLLQKDVKFKDLGLLIIDEEQRFGVSHKEKIKQLKKNVDVL
TMTATPIPRTLHMAMTGIRDMSVMETPPENRYPIQTYVVEYSDSLIRDAIMRELSRGGQV
YYVYNRVNTIYEEAKRLSALVPEARIAVAHGQMHENELEEVMMDFYEHRYDVLVCTTIIE
TGLDIPNVNTLIVISADRFGLSQLYQLRGRVGRSSTQAFAYFTYKKDKTLSEAAEKRLAA
IRDFTEFGAGFKIALRDLEIRGAGNILGTEQHGHMMTVGYDLYCKLLAEAVRELRSEPEP
EEVQPVIDLKLSAYIGDDYIPNAAQKIDIYRRIAAVETLEEADDLEEEIEDRFGDIPEPT
RNLLFVARLKVLAKKLKLSSIIQQNDIITFKFQSANALSPEQFFALSAAFQNRVNFLGTT
VPAFTFKVRNLSGYKLFLRIQKLLEEMVEFLQLPSNE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggatatagattttttatcgagagaaataaccgaatttaataaactggccggcgacctg
gaaaaggggctgtccgggctcttcgcctacggactttccgattcccagagggccttcctg
atagccgcggtaagaaaaagattcccgaaacccgtgctggtggttaccgccgattcgctg
gacgccaggaagctggccgacgacctagcgtattttctggggaccgaagacgttgagatg
ttcccggcgagctccgtgataccttacgagaccgccgccaggagcccggaattaactgcg
caaaggctgaaggtcatggaatccctggtcaccggcaaacaaccggtggtcgtatccccg
ttgcaggcccttaccaacagaatgatgccacccgatgttgttaaaaaattcacaatcaag
ctccgggtgggagattcaataccactggaagaggcggttttaaagctttccttcatggga
tacgagagggtggacaccgtagaaggcaggggccagttcgccgtgcggggcggtatcctg
gatgtgtatcccctgacggcggaaaatccctaccgcatggagtttttcggtgatgaggtg
gactctatccgggaattttcggtggaagaccagcgatctatggataagctggaagaggta
tttatattccccgcccgggaagtggtgttcgacagggaaacggccaaaaacgccgccatc
agcatagcccgagagctagaggacagaaaaaaggctttcgagcttacggggtccgcccaa
atagccgcacagctggaggaaaagatactagaacatatagaaaagctggaaaacggccag
ttttttgaatcggcccagcattacatttcccatttttattcgaacctttcggctctgacc
gattattttactttgccaccgcttgtgatactggttgagccgggaaagatcgtagagagc
accaagaattcggcttttgaaatagaagagacctacaagggccttctggaaaagggcgag
gtgctgccttcggtttcggaaatgtattttacaccttttgacatcctggaaaatctgagg
aagtcgaaaaccgtttacatttccatgctcccgcggattccgggagaatttgaaataggc
ggtttatactccttccagttccgttcggttacctccttccacggcaaggtggacctgctg
gcagaggaggtagcgcattttaagaaaaagggataccgcgtcgttatcctttccgggacc
ggcgagaggggaaaacatctcagcaggactctgagggaaaaagcacttgatgccgccttt
tacggtactttgggtgacgaactgctgccgggccaggtggtaataactccgggttctctg
gaaaaggggtttcagattcccgagataaagttcgcgctgatttccgatctggacgtctac
ggacaacccaagataaagcaaaaaaggccgaaggtgcgcgccggaggcaaaagaattact
tcgatcgatgagctttcggccggggattatgtcgtgcacataacccacggaatcggcagg
tacttggggatagagaccctggaggtggaggggcacaaaaaggactacttcgccatccag
tacgccggcggggataaactttacgtacctaccgatcaggtggagatgctccacaaatac
gtgggacccgaagacaggccgccgaagttgaataaattggggagcagcgagtgggccaag
gccaaaacccgggtcaaggaatcggtaaaggagatggcgaaagaactgctggagctttac
gccgcccggcaggccatgaagggttttgccttttctcccgatacggtgtggcagaaggaa
ttcgaggacttgtttccgtatgaggaaacgccggaccagctcaccgccatcgaggaagta
aaaagggatatggagagcgacaaatgcatggataggctcctctgcggcgacgtgggctac
ggcaagaccgaagttgccctgagggcggctttcaaggcggtcatggatgcgaagcaggtg
gcggtgctggtacccaccaccatcctggccgagcagcactaccgcaccttttccgagaga
tttgcaccttttccggtaagggtcgaggtgataagtcgttttaaatcaaaggccgaacag
aaggctataataaaagacctgaagaacggtgctatagatataattataggcacccacagg
ctgttgcagaaggacgtgaagttcaaggatttagggctccttatcatagatgaagagcag
aggttcggcgtctctcacaaggaaaagataaaacagctcaagaaaaacgtggatgtgctt
accatgaccgcgactcccataccgcggacgctgcacatggctatgaccggtataagggat
atgagcgtcatggagactccccccgaaaaccgctaccccatacaaacctacgtggtggag
tacagcgactcccttataagggacgccataatgagagaactttcaaggggagggcaggtt
tattacgtctacaatagagtaaataccatctatgaagaggctaaaagactctcagccctg
gtgccggaggccaggatcgcggtggcccacggacagatgcatgagaatgagctggaagag
gtgatgatggatttttatgagcaccggtacgacgtgctggtgtgcaccaccatcatcgag
acggggttagacatacccaatgtcaatacccttattgtaatatcggccgaccgatttggt
ctttcccagctttatcagctgcgggggcgcgtcggcaggtccagcacccaggccttcgcg
tactttacttacaagaaggataaaacgctcagcgaggcagcggaaaagcgcctggcagcc
ataagggatttcaccgaattcggcgccgggttcaagatagcactgagggacttagagatc
cgcggtgccggtaatatcctcggcaccgaacagcacggtcacatgatgaccgtgggttac
gacctttactgtaagctcctggccgaggccgtccgggagctcaggagcgaacctgagccg
gaagaggtccagcctgtaatagacctcaagctgagcgcttacatcggagacgattacatc
ccgaatgccgcccagaagatagatatataccggcgcatcgctgcggtagagaccctggaa
gaggccgacgacctggaagaagaaatagaagacaggttcggggatataccggaacctacc
aggaatcttttatttgtagcgcgcctcaaagttctggccaaaaaattaaaattatcgagt
attatccagcaaaatgatataataactttcaagtttcagtcggctaatgctctatcgccg
gagcagtttttcgccctcagcgccgcctttcaaaatagggtgaattttcttggcactacg
gtgccggcctttacttttaaagtaagaaatctatcggggtacaagctgtttttgcggatt
caaaagttgctggaagagatggttgaatttctacaacttccctccaatgaataa
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