Thermosediminibacter oceani: Toce_0250
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Entry
Toce_0250 CDS
T01289
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Toce_0250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
toc03400
]
Toce_0250
Enzymes [BR:
toc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Toce_0250
DNA repair and recombination proteins [BR:
toc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Toce_0250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DHQ_synthase
Motif
Other DBs
NCBI-ProteinID:
ADL07036
UniProt:
D9S0A8
LinkDB
All DBs
Position
247163..248056
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AA seq
297 aa
AA seq
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MPVVIVEDEKLELTNLSKVMWPEDNITKADFIDYYVRVAPYVLPHLKDRPMVFTRYPDGI
YGKAFYQKNIPDYAPEWLRTYDEESFTGGKRKVVRYALIDDMKSLLWAANQASLEMHPWL
SRVGTIEYPDFVVFDLDPMENTDFEDARQLALALKKLLDMEGLVGFPKTSGATGIQVYVP
IEPRYTYREVRVFAKIFCRVLERTFPEKATTERSIKKRRGKVYLDYLQNIKGKTLIAPYS
PRPIAGAPVSAPVTWDELEEGVRPSMFTIRNMPERLQKVGDLFKGVLEVKQRIDRWL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgtcgtcatagtagaagacgaaaaacttgagctgaccaacctttccaaagtgatg
tggcctgaggacaacataacaaaggctgatttcatagactactacgtccgcgtagctcct
tatgtactgccccacctaaaggaccgccccatggttttcacccggtaccccgacggcata
tacggcaaggctttttaccagaaaaacattcccgattacgctcccgagtggctcaggacc
tacgacgaggagagtttcaccggaggcaagaggaaggttgtgcgctacgcccttatcgac
gatatgaaaagcttgctctgggccgcgaatcaggcaagccttgagatgcacccctggctt
tccagagtggggaccatagaatacccggacttcgtcgtgttcgacctggaccctatggaa
aataccgatttcgaggacgcccggcagctggcgctggcgctgaaaaaactgcttgatatg
gagggactcgtgggatttccgaagacttccggtgccaccggcattcaggtatacgtgccg
atagagcccaggtacacctaccgggaggtcagggtttttgcaaaaattttctgcagggtt
ctggaaaggacctttcccgaaaaagcaactaccgaaagaagcataaaaaaacgcaggggc
aaggtgtacctcgactacctgcaaaacataaagggcaaaacgctgatcgcaccttacagc
cccaggcctatagcgggagcgccggtatcggctccggttacatgggatgaacttgaagag
ggggtcaggccctctatgttcaccatcaggaacatgcccgaaaggcttcaaaaggtggga
gacctgttcaaaggcgtcctggaagtgaaacagcgtattgacaggtggctgtag
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