Thermoleptolyngbya oregonensis: HNI00_21520
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Entry
HNI00_21520 CDS
T09452
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tog
Thermoleptolyngbya oregonensis
Pathway
tog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNI00_21520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tog03400
]
HNI00_21520 (mfd)
Enzymes [BR:
tog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNI00_21520 (mfd)
DNA repair and recombination proteins [BR:
tog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HNI00_21520 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOB45422
UniProt:
A0AA96Y5T3
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All DBs
Position
5170227..5173772
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AA seq
1181 aa
AA seq
DB search
MAFSSICRVMGRSPLTSELLTKLNQQRRLILNGIARLPKGLVASTLAQVAQRPLLVIAAT
LEEAGRWTAQLEAMGWNTVHFYPTSEASPYEPFDPESEMTWGQLQVLADLARVESLPQPS
QLAIVSTERSLQPHLPPVETFRQFCITLTQGLEIDLKSLSRQLALLGYEKVAMVETEGQW
SQRGDIIDVFPVAAELPVRLELFGDELEKIREFDPASQRSLDNVPQLVLTATDFAPMVLL
GLGASGQGDLAESLELLKPYLSPEEAERLAESRRLEGARRFLGLAFERPASLLDYLPENT
LVAIDEVEQCQAHGDRWFDHADDHWREISKGQGPAGDGVAAQSPPAPTLPKTHRPFTESL
AACDRFLCLHLSELAEEGSGLNLSSRPVPAVPHQFGRLAETIRQERDRQFGIWLISAQPS
RSVALLQEHDCPAQFIPNPHDYPAIDRLQANRVPTAVKYSGLAELEGFILPTFRIVVITD
REFFGQHTLATPSYVRKRRRAASKQVDPNKLQPGDYVVHKNHGIGQFIKLESLTLDNETR
EYLVLKYADGLLRVAADQVNALSRFRGVGEGKPELSKMTGKAWERTKQKVRKAIKKVAFD
LLQLYAQRAQQQGHAYPPDTPWQEEMEDSFPYQPTTDQLKAIQDVKRDMEGDRPMDRLVC
GDVGFGKTEVAIRAIFKAITAGKQVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFR
TNAEKQDILKRLASGELDVVVGTHQLLGKGVQFKDLGLLVVDEEQRFGVNQKEKIKTLKT
QVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEMVRTAIRQELD
RGGQVFYVVPRVEGIEETAAKIREMVPGVRMAIAHGQMQEGELEATMLTFNNGEADILVC
TTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSQLTETAR
QRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIKEIR
GQEIPQVDDTQIDLRLTAFIPADYIPDLDQKMSAYRAVAAAQTKQELTEIAVDWSDRYGP
IPPAALQLFRVVELKQIAKKLGFSRIKPDGKQHILLETPMEEPAWNLLKDKLPSHLQPRF
VYTPGKVTVRGLGALSADLQLENLIDWLSRMQGALLEPSLV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttcgtcaatttgtcgcgtcatggggcgatcgcccctcacgtccgaactgctc
accaagctgaaccagcagcgccgcctcattctcaatggcatcgcccgcctgcccaaggga
ctggtcgcctctaccttggcccaggtggcccagcgcccgctgctggtgattgccgccacg
ctggaggaagccggccgctggacggcccaactggaggcgatgggctggaacacggtgcat
ttttaccccacgtcggaagcgtcgccctacgaaccctttgaccccgaatcggaaatgacc
tgggggcagttgcaggtgttggcagatctggcgcgggtcgagtcgttgccccagccgtct
cagcttgcgattgtgtccaccgagcgatcgctccagccgcacctgccgcccgtggagacg
tttcgccagttttgcatcacgctgacccagggcttggaaattgacctgaaatccctcagc
cgccaactggcgctgctgggctacgaaaaagtagcgatggtggaaacggaggggcagtgg
agccagcggggagacattatcgacgtgtttccggtggcggcggagttgcccgtgcgcctg
gagctatttggcgatgagctagagaagatccgcgagtttgaccccgccagccagcgatcg
ctcgacaatgtgccccagttggtgctgacggcaacggattttgcgccgatggtgttgttg
ggattgggggccagcggtcagggcgatttggcagaaagtttggagcttcttaagccgtac
ctatccccggaagaggcagagcggctggcggaaagcaggcggctggaaggggcgcggcgg
tttttggggctggcgtttgagcggcccgcgtcgctgctggattatttgccagagaatacc
ctggtcgccattgatgaagtggagcagtgtcaggcgcatggcgatcgctggtttgaccat
gcggacgaccactggcgcgagatatccaaggggcaggggccagcgggcgacggcgtggcc
gcgcaatctcccccggctccaaccctccccaagacccaccgaccgtttacggagtccctt
gcggcgtgcgatcgcttcctctgtctacacctttccgaactggcggaggagggcagcggg
ctgaacctgtcgagccgcccggttcccgccgtgccgcaccagtttgggcgcttggcagag
acgattcgccaggagcgcgatcgccagtttgggatctggctgatttcggcgcagccgtcg
cggtcggtggcgctgttgcaagaacacgactgtccggcacagttcatccccaacccccac
gactatccggccatcgatcggctccaggcaaaccgcgtgccgacagcggtgaagtattcc
ggtctggcagagctagagggcttcattctgccaacgttccgcatcgtcgtcatcaccgac
cgcgagttttttgggcagcacaccctggccacgcccagctacgtccgcaagcgtcgccgc
gccgcctccaaacaagttgacccgaacaagctgcaaccgggtgattacgtcgtccacaaa
aaccacggcattggccagttcatcaagctggaaagcctgacgctggacaacgaaacccgc
gaatatctggtgctgaaatatgccgacgggctgctgcgggtggcggcggatcaggtgaat
gcgctgtcgcggtttcgcggcgtgggcgagggcaaacccgaactcagcaaaatgacgggc
aaagcctgggaacgcaccaagcaaaaggttcgcaaggcgattaagaaagtcgcctttgac
ctgctgcaactctacgcccagcgggcccagcagcagggccacgcctacccgccggatacg
ccctggcaggaggaaatggaagactcgttcccctaccagcccacgaccgaccagctcaag
gcgattcaggacgtgaagcgggatatggagggcgatcgcccgatggatcggctggtctgc
ggcgatgtgggcttcggcaaaacggaagtcgccatccgcgccatcttcaaggcgatcacc
gctgggaaacaggtcgccctgctcgcgccgacgacgattttgacgcagcagcattaccac
accctgaaggagcgctttgccccatacccgattcaggtcggtctgctgaaccgttttcgt
accaatgccgaaaagcaggacatcctgaagcgcctcgcctctggggaactggatgtggtg
gtggggacgcaccagcttttgggtaagggcgtgcagttcaaagacttggggctgctggtg
gtagacgaagagcagcgctttggcgtgaaccagaaggaaaaaatcaaaaccctgaaaacc
caggtagacgtgctgaccctcagcgccacgccgattccccggacgctttacatggcgctg
tcgggcgtgcgcgaaatgagcctgattaccacgccgccgccctcccgccgccccatcaag
acgcacctgtcgccctacgacccagagatggtgcggacggcaattcggcaggaactcgat
cgcggtgggcaggtgttttacgtggtgccacgggtggagggcattgaggaaaccgccgcc
aagattcgggaaatggtgccgggggtgcggatggcgatcgcccacgggcagatgcaggaa
ggcgaactggaagccaccatgctcaccttcaacaacggcgaggcggatatcctcgtctgc
accaccattatcgaatcggggctggacatcccccgtgtgaatacgattctgatcgaagac
gcgcagaagttcggtctgtcccagctttaccaactccggggacgggtcggccgcgcgggc
atccaggcccatgcgtggctattttacccaaaacaaagccagcttacggaaaccgcccgt
cagcggctgcgtgccattcaggaatttacccagcttggctctggctatcagttggccatg
cgcgacatggagattcgcggcgtgggcaatctgctgggggcagagcagtcggggcagatg
gacgcgatcggctttgacctgtatatggaaatgctggaggaagccatcaaggaaattcgc
gggcaggaaattccccaggtggacgacacccagatcgacctacgcctcactgccttcatc
cccgccgactatatccccgacctggatcaaaagatgagcgcttatcgcgccgtcgccgct
gcccagaccaagcaggaattgaccgagattgcggtggattggagcgatcgctatggcccc
attccccccgccgcgctgcaactgttccgcgtggtggagctaaagcagattgccaagaaa
ctgggcttctcgcgcatcaagcccgacggcaagcagcacatcctgctagaaacgccaatg
gaagaacccgcctggaacctgctgaaggacaagctgcccagccacctgcaaccccgcttt
gtctacacccccggcaaagtcactgtgcgcggactgggggccctcagcgccgatctccag
ctagagaacctgatcgactggctcagccggatgcagggggccttgctagagccgagcttg
gtttag
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