Tateyamaria omphalii: BWR18_07685
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Entry
BWR18_07685 CDS
T04652
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tom
Tateyamaria omphalii
Pathway
tom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BWR18_07685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tom03400
]
BWR18_07685
Enzymes [BR:
tom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BWR18_07685
DNA repair and recombination proteins [BR:
tom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BWR18_07685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
AAA_30
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APX11578
UniProt:
A0A1P8MU59
LinkDB
All DBs
Position
complement(1541738..1545193)
Genome browser
AA seq
1151 aa
AA seq
DB search
MPNAQHITVSGAPEGFDARLILDEVAKGGPVCHVARDDKRLAAMQAALRFFVPDMPVLVF
PGWDCLPYDRVSPNADISAQRMATLAALVHGMPERFILLTTLNAATQRVPARDLLREAAF
SATVGSRVDEGALRNFLVRMGFVQSPTVIEPGDYAIRGGIIDIYPPGDLGPVRLDLFGDV
LDGARRFDPATQRTTEKLDVIELAPVSEVILDEAAVTRFRQNYRLEFGAAGTDDPLYEAV
SAGRKHQGAEHWLPLFHDGLDTLFDYLPGATITLDDQVTPSRLARWESIEDQYETRRMAM
QNRSKMDSVYKPAAPAGLYLDDAAWEAAVEGFRVLSFAQLPQATGPGVTDAGGRIGRNFS
PERQQESISLFGALASHVKAKMADGPVVIASYSEGARERLTGLIEDEGLAEVVPIPNATR
VGKRGLHLAVWALEHGFEAPGLTVISEQDVLGDRLIRQPKKKRRAENFLTETQSLSPGDL
VVHVDHGIGRYQGMEVVTAAGAAHECLLLEYAERSKLYLPVENIELLSRYGHEEGLLDRL
GGGAWQAKKAKLKERIREMADRLIRIAAERALRKAPILEPPPGMWDAFSARFPYQETDDQ
LNAIAAVMDDLTAGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQH
YKSFAERFRGFPIEVRQLSRFVSAKDAAATRDGMSKGTADIVVGTHALLAKGVRFQNLGL
LVIDEEQKFGVGHKERLKQMRSDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDAVTIREALLREHYRGGQSFYVVPRISDLPEIEAFLKEQLPELNYVVAHGQM
AAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRTKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGFELYQSMLEEAIGKIKAGEMEGLADDDGQWAPQINLGVPVLIPEAYVPDLDVRL
GLYRRLSDLTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFIQDQRGMAKVKDNKIVVRRDWAKDSDKIKGAFAIARDLAEK
VVAQKKKAKAV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacgcccaacacatcaccgtatccggcgcgcccgaggggtttgacgcgcggctg
atccttgacgaagtcgccaagggtggtcccgtctgccatgtggcgcgcgatgacaagcgg
ctggcggccatgcaggcggccttgaggttctttgtgcccgacatgccggtacttgtgttt
ccgggttgggattgcctgccatacgaccgcgtatctccgaacgctgatatttcggcccag
cggatggcgaccttggccgcgttggtgcatgggatgccggagcggttcatcctgctgacc
acgctgaatgcggcgacacagcgggtgcctgcgcgggatctgctgcgcgaggcggcgttt
tcggccactgtcggcagccgggtggacgagggtgcgctgcggaatttccttgtccgtatg
ggctttgtgcagagcccgacggtgatagaaccgggcgattatgccattcgcggggggatc
attgatatttacccaccgggtgatctgggccctgtgcgtctggatctgtttggcgatgtg
ctggacggtgcgcgccgctttgacccggcgacgcagcggacgacggaaaagctggatgtg
atcgaactggcgccggtgtccgaggtgatcctggatgaggcggcggtgacgcggtttcgg
cagaattaccgcctggagtttggggcggcgggcactgacgatccgctgtatgaggcggta
agtgcggggcgcaagcatcagggggcggagcattggctgccgctgttccatgatgggctt
gatacgctgtttgactacctgcccggcgcgaccattacgctggatgatcaggtcacacca
tcgcggttggcgcggtgggagagcatcgaggaccagtacgagacgcggcggatggcgatg
cagaaccggtcaaagatggactcggtctacaagcctgcggccccggccgggctgtatctg
gacgatgcggcgtgggaggcggcggttgagggctttcgcgtgttgtcctttgcgcagttg
ccgcaggcgacgggccccggcgtcacggatgcgggtggacggatcgggcgcaacttttcg
cccgagcgacaacaggaatccatcagccttttcggggccttggcgagccatgttaaggcg
aagatggcggatggaccggttgttatcgcgagctattccgagggtgcgcgcgaacgcctg
accggactgatcgaggatgaggggctggcggaggtcgttcccattccgaatgccacgcgc
gtcggcaagcggggtctgcacctggcagtctgggcgctggagcatgggttcgaggcgccc
ggcctgactgtgatctcggagcaggatgtgctgggtgatcgcctcattcggcagccgaag
aagaagcggcgggcggagaactttctgaccgagacgcagtcgctgtcgccgggggatctg
gtcgtgcatgtcgatcacggcattggccgctatcaggggatggaggtcgttaccgccgct
ggggcggcgcatgagtgcctgctgctggaatatgcggaacgctcgaagctttatttgccg
gtcgagaatatcgagttgttgtccaggtacgggcatgaggaggggttgctggaccgcctg
ggcggcggcgcgtggcaggccaagaaggcgaagctgaaagagcgcattcgcgagatggcg
gatcggctcattcgcattgccgccgagcgcgcgctgcgcaaggcgcccattctggagcct
ccgccggggatgtgggacgcgttttcggcgcgctttccctatcaggagacggatgatcaa
ctgaacgccatcgctgccgtgatggacgatctgaccgcgggccagccgatggaccggctg
atctgtggcgacgttggctttggcaagaccgaggtcgcgatgcgcgcggcctttgtcgcg
gcgatgtcaggtgtgcaggttgcggtgatcgcgcccacgacgctgttggcgcggcagcac
tacaaaagctttgcggagcggtttcggggttttccaatcgaggtgcggcagttgagccgt
tttgtcagcgccaaggatgccgctgccacgcgcgatgggatgtcgaagggcacggcggat
atcgtggtgggcacgcatgcgctgctggccaagggggtgcggtttcagaacctgggcctg
ctcgtcattgatgaggaacagaaattcggggtggggcacaaggagcggctgaagcagatg
cggtcggatgtgcatgtgctgacgctgacggcgacgcccattccgcgcaccttgcaattg
agcctgacaggcgtgcgcgatctgtcgatcatcgggacgccgccggtcgaccggttggcg
atccgcacttacgtgtccgagttcgacgccgtgaccattcgcgaggcgctgctgcgcgag
cattaccggggcgggcagtcgttttacgttgtgccacgcatcagtgatctgccggagatc
gaggcgtttctgaaggaacagctgccggaactgaattacgttgtcgcccatgggcagatg
gcggcgggcgagttggatgaccgcatgaatgcgttctacgacggcaagttcgatgtgctg
ctggcgacgacgattgtggagagcggtctggatatccccacggccaacacgatggtggtg
caccgggcggacatgttcggtctggcgcaactgtaccagatccggggccgtgtggggcgg
tcgaagacgcgggcctatgcttatctaaccacgaagccgcgcaccaagctgacggccacg
gcagagaagcggctgcgcgtgctgggctcgcttgatacgcttggggccgggtttacgctg
gcctctcaggaccttgatattcgcggggccgggaacctgctgggtgaagagcagtcgggc
cagatgcgcgacgtgggctttgagctgtaccaatccatgctggaagaggcgattggcaag
atcaaggcgggcgagatggagggcctggccgacgatgacgggcaatgggcgccccaaatc
aatctgggcgtaccggtgctgatccccgaagcctacgtccctgacctggatgtccgtctg
gggctttaccggcgcttgtcggacctgaccaccaaggttgagcttgagggctttgccgcc
gagttgatcgaccggttcggcaaactgcccaaggaggtgaacaccctgatgctggtcgtg
cgcatcaaggcgatgtgcaagcgggcgggcatcgcgaagttggatggcgggccgaagggc
gcgacgatccagttccataacgacaagttcgcctcgccccaggggctggtcgagttcatt
caggaccagcgcggtatggccaaggtcaaggacaacaagatcgtcgtgcgccgggattgg
gccaaggacagcgacaagatcaagggcgcctttgccattgcgcgcgatctggcagagaag
gtcgtggcgcagaagaagaaggccaaggcggtttag
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