Tenacibaculum ovolyticum: PG911_00175
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Entry
PG911_00175 CDS
T08793
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tov
Tenacibaculum ovolyticum
Pathway
tov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PG911_00175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tov03400
]
PG911_00175 (mfd)
Enzymes [BR:
tov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG911_00175 (mfd)
DNA repair and recombination proteins [BR:
tov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PG911_00175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WBX76708
LinkDB
All DBs
Position
36232..39567
Genome browser
AA seq
1111 aa
AA seq
DB search
MSKQTIVNHYQQSGNVNQIVSELQQEQHHFQIANLVGSSLSFVISESFKKADKPFLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIDETDNANVLLRSEVLNRINSRRKPAI
IVTYPTALFEKVVTKKELEKNTLKITVGENVSPDFINEVLFEYNFNRVDFVTEPGEFSVR
GGIIDVFSFSNDEPYRMEFFGDEVDSIRTFDVETQLSKEKQQKVSIMPNVENKTLQENRE
SFLKYISSKTAIFVKNTQILTENLDKFFKKAELSFNELSTDVKHAKPTELFCNGALIEKE
LQEFTLIEMSSRPETKGLSEIIFNTHPQPSFNKKFELLIQNFNEFSAKGFTNYIFCSNDK
QAQRFHDIFDDNEQDVSYETIVFPLYQGFVDLENKIVCYTDHQIFERYYKFRLKNGYEKK
QSITLQELTKLEIGDYVTHIDHGIGKFAGLQKIDVEGKKQEAIKLIYGDRDILYVSIHSL
HKISKFNGKDGKPPKIYKLGSDAWKKVKQKTKARVKHIAFNLIQLYAKRKLQKGYAFGPD
THMQHELEASFIYEDTPDQFSSTQDVKADMEKPQPMDRLVCGDVGFGKTEVAIRAAFKAV
DNGKQVAVLVPTTILAFQHFKTFTERLKDFPVTIDYLNRFRTTKQRNGVIEGVANGSVDI
VIGTHQLTNKKLQFKDLGLLVIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFS
LMAARDLSVIKTAPPNRHPIETNVIRFGEEIIRDAISYEISRGGQVFFIHNRIENIKEVA
GLLQRLVPSAKIGIGHGQMEGKKLEELMLGFMNGEFDVLVSTTIIESGLDVPNANTIFIN
NANNFGLSDLHQMRGRVGRSNKKAFCYFITPAFHMMTDDARKRIEALVLFSELGSGLNIA
MKDLEIRGAGDLLGGEQSGFINDIGFDAYQKILEEAIIELKENEFKDLYPVDENIPKEYV
KEVQIDTDFEILFPDDYVNSVTERLSLYNKLGSLTKEEELVEFENQITDRFGEYPTQVQD
LLDSVRIKWFAKELGLEKIILKQKRMIGYFVSDQQSGFYQTEGFTKMLKYVQHNSKSCVM
KEKKTKNGLRLLITFIRIDSVNRALKVLQKI
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagcaaactattgtaaatcattaccaacaatcgggtaacgtaaaccagattgta
agtgaacttcaacaagaacaacaccattttcaaatagcgaatttggttggttcttcgttg
tcttttgttatttctgaaagttttaaaaaagcagacaaaccctttttattaatttttaat
gataaagaagaagctgcatattatttaaacgatttagaacaattattgggagataaaaac
gtgttattttatccaggttcttaccgaagaccttaccagatagatgaaaccgataatgct
aatgtattattaaggtctgaggttttaaatcgtatcaattcacgaagaaaaccagctata
atagttacttaccctactgccctatttgaaaaagtagttaccaaaaaagaattagaaaaa
aatacattaaaaattacggtaggcgaaaatgtatctcccgattttataaacgaagtatta
tttgaatacaattttaatcgcgtagactttgttaccgaaccaggtgagttttctgttaga
ggtggaattatagatgtgttttcattttcgaatgacgagccttatcgtatggagtttttt
ggtgatgaggtagatagtattcgaacttttgatgtagaaacacaactttctaaagaaaag
caacagaaggtaagcatcatgccgaatgtagaaaacaaaacgttacaagaaaatagagaa
agctttttaaaatatatatcatcaaaaacggcaatttttgtaaaaaacacacagattctt
actgagaatttagataagttttttaaaaaagctgaattatcgtttaatgaactatctaca
gatgtaaaacatgctaaaccaacagagttattttgtaatggggctttaatagaaaaagaa
ctacaagagtttacattaatagaaatgtcatctcgaccagagactaaaggtctttcagag
ataatttttaatacgcatccgcagccctcttttaataaaaagttcgaactattaattcag
aattttaacgaattttcagcaaaaggatttaccaattatattttttgttctaacgataaa
caagcacaacgatttcacgacatttttgatgataatgagcaagatgtttcttatgaaaca
attgtatttccgttgtaccaagggtttgtagatttagaaaataaaattgtttgttatacc
gatcatcaaatatttgaacgctattataaattccgtttaaaaaatggatatgagaaaaaa
caatccattacattacaagaactaacaaagttagaaattggtgattatgtaacacatatt
gatcatggaatcggaaaatttgcaggtttacaaaagattgatgtagaaggaaaaaaacaa
gaagcaattaaacttatttatggcgatcgtgatattttatatgttagtattcattcacta
cataaaatatcgaagtttaatggtaaagacggaaaaccacctaaaatatataaattaggt
tcagatgcttggaaaaaagtaaagcaaaaaaccaaagcaagagttaagcatattgccttt
aatttaattcaactttacgcaaaacgaaaattacagaaaggatatgccttcggacccgat
acgcacatgcagcacgaattagaagcaagttttatatatgaagatacaccagatcagttt
tcatcaacacaagatgtaaaagcagatatggaaaaaccacaaccgatggatcgtttagta
tgtggagatgttggttttggaaaaacagaagttgctattcgtgcagcttttaaagcagtt
gataacggaaaacaagtagccgttttagtaccaacaactattttagcgtttcagcacttt
aaaacctttacagaacgtttaaaagacttccctgttacaattgattacctaaatcgtttt
agaaccacaaaacagcgtaatggagttatagagggagttgcgaacggaagtgttgatatt
gtgataggaacacatcaattaacgaataaaaaactacaatttaaagatttaggattatta
gttatcgatgaagaacaaaaatttggagttgcagtaaaagataagctaaaaacgattaaa
gaaaatgttgatacgctaacattaacagcaacgccaataccaagaaccttacaatttagt
ttaatggcagcgcgtgatttatctgttataaaaacagcaccgccgaaccgccatcctatt
gaaacgaatgttattcgttttggagaagaaattattcgcgatgctatttcgtatgaaatt
tctcgaggaggtcaagtgttttttattcacaatagaatagaaaacattaaagaagtagca
ggtttattacaacgtttagtaccaagtgccaaaattggtattggtcatgggcaaatggaa
ggtaaaaagctagaggaattaatgcttggttttatgaatggtgaatttgatgtattggta
tcaacaaccattattgaaagtggattagatgtaccaaatgcaaatactatttttataaac
aatgccaataatttcggattatcagacttgcaccaaatgcgtggtcgtgtaggacgttct
aataaaaaagctttctgttattttattacgccagcatttcatatgatgacagatgatgct
cgtaaacgtattgaagcattagtgctgttttctgaattaggaagtggattaaatatagcc
atgaaagatttagaaattcgtggtgctggagatttattaggaggtgaacaaagtggattt
attaatgatattggatttgatgcttatcaaaaaattcttgaagaagcaattatagaacta
aaagaaaatgagtttaaagacctgtatccagttgatgaaaatataccgaaggaatacgta
aaagaggtgcaaattgatactgattttgaaattttatttcctgatgattatgtaaattcg
gtaacagaacgattgagtttgtataataaattaggtagtttaaccaaagaagaagagtta
gttgagtttgaaaaccagattaccgatcgctttggagaatacccaacacaagttcaagat
ttattagatagtgttcgtattaaatggtttgcaaaagaattaggtttagaaaaaattatt
ttaaagcagaagcgtatgattggatactttgtatctgatcaacaaagcggtttttatcaa
acagaaggatttacaaaaatgttaaagtatgtgcagcataattcaaaaagctgtgtaatg
aaagagaagaaaaccaaaaatggattacgtctattgattacttttattagaattgatagt
gtaaatagagctttaaaagtattgcaaaaaatatag
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