Tympanuchus pallidicinctus (lesser prairie-chicken): 128075834
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Entry
128075834 CDS
T08967
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai04510
Focal adhesion
tpai04512
ECM-receptor interaction
tpai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128075834 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128075834 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128075834 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpai04147
]
128075834 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
tpai00536
]
128075834 (COL4A5)
Exosome [BR:
tpai04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128075834 (COL4A5)
Glycosaminoglycan binding proteins [BR:
tpai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128075834 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128075834
NCBI-ProteinID:
XP_052528889
LinkDB
All DBs
Position
Unknown
AA seq
1689 aa
AA seq
DB search
MEWRWRSRSLAVGCVVLLLLGCWGPREAAAAACHGCTSLTKCDCSGVKGEKGERGFPGLE
GQPGLPGFPGPEGPPGPRGAKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPP
GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEPGEIITSLLPGHKGDQGFP
GLPGIPGPPGPIGIPGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQG
PPGPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGIKGEKGEQGEPGK
RGKPGKDGEPGQPGRDGLPGGPGVNGVPGRDGEKGEKGDTGPPGPPGSVITRPGIDATVG
PKGSKGLPGLPGAKGERGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDPGLPGV
SIPGQPGLDGPRGPPGPPGPPGPPAPSVPPGEGLCEQGPPGPPGIPGQQGFAGERGQKGD
QGDTCFNCIGTGISGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGPPG
APGRPGPKGDPGDVLASPRMKGDKGEPGFPGPPGLPGIDGTPGRDGLPGLPGPKGEPGSV
AFKGEMGIPGDPGVPGLPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGDPG
QTITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLSGIPGAKGEPGIPGIGLPGPPGPKG
FPGTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGIKGVQGPKGD
PGFPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGPPGPPGPVGPP
GLQGLPGEKGDPGPPGFDVPGPPGDQGTPGYPGPPGLPGPQGSPGPPGRDGIPGFPGAKG
EMGVMGAPGPPGPPGTPGRSGLPGLKGNNGLPGPPGPPGPLGQKGVKGEAGLPGPPGKVD
PKQLGAKGEKGEPGIPGIPGLSGQKGYQGLPGDPGPPGLSGPPGAPGLPGIKGDMGLPGQ
PGPTGPPGLKGAMGEMGLPGPPGSKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSSVGIP
GLPGPKGDLGLPGYPGSPGSKGVAGNPGLPGLPGSPGAKGEPGLPGFPGTPGIPGPKGIE
GPPGNPGLPGPPGPVGDTGRPGPPGPPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPGPPG
LPGLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGSPGP
PGVPGRPGSPGPEGPRGPPGSGGLKGEKGNPGQPGPPGLTGQKGDQGPPGRQGDPGRPGL
NGMKGDPGVPGVPGFPGMKGPTGPAGPAGLMGSQGLPGPPGPPGLPGTIGRSIVVKGDPG
PPGPPGLPGSKGPPGLAGPQGLPGPVGVPGDPGRDGLPGFDGPAGRKGERGLPGQPGSRG
IQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGFSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLTGQN
IQPFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLKAGDLRTRIS
RCQVCMKKT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcggtggcggagtcgcagcctggccgtgggctgcgtggtgctgcttctgctg
ggctgctgggggccgcgggaggcggcggcggcggcttgccatgggtgtacatctctaacc
aaatgtgattgcagtggagttaaaggagaaaagggtgaaaggggattcccaggcttggaa
ggacagccaggtctgcccgggttcccaggcccagaagggcctcctggtcccagaggtgca
aagggtgatgatggacttccaggacctattggccccaagggaatcagaggtccgccaggg
cttccaggatttccaggaacaccaggacttcctggtttaccaggacaagatgggccacca
ggacctcagggtatcccaggctgcaatggaacgaagggagaacgtggattcccaggcagt
ccaggttttccaggtttacaagggcctcctggaccccctggtctgccaggtatgaagggc
gaaccaggtgaaataattacatccttgctgccaggacataagggtgaccaaggatttcca
ggtcttccagggatacctggtccacctggtcccataggaataccaggtccagttggtcct
ccagggcccccaggtttgacaggacctcctggtccaccagggctaccaggacctaagggt
aatatgggcttgaatttccaaggacctaaaggtgaaaaaggtgaacaaggtctccaagga
cctccagggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcag
aaaggagatcagggtattccaggtgatccagggccaccaggacttccagggccacaaggc
cctcctggtcttcccggtggcataaagggtgaaaaaggtgagcaaggagagccaggcaaa
agaggaaagccgggcaaagatggagaacctggtcagcctggtagggatggtttacctggt
ggacctggagtaaatggtgttccaggaagagatggtgaaaagggtgaaaaaggtgacact
ggtcctcctggtcctcctggaagtgtcattacaagaccaggcattgatgcaacagtagga
ccaaaaggtagcaaaggattgccaggactcccaggagccaaaggggagcgtggattctct
ggtaggccaggcccacctggcttgccaggctctccagggatcacaactgttggacctcct
ggcccacctggcttacctggtgagagagggcagaagggagatccaggtttacctggtgtt
tccattcctggacaaccaggacttgatggaccacggggacctccagggcctccaggtcct
ccaggaccacctgcaccgtctgttcctcctggtgaagggttatgtgagcagggtccacca
ggtcctccaggaattccagggcaacaaggctttgctggagagagaggccaaaaaggtgac
caaggagacacatgtttcaattgtataggaactggaatatctgggcctcctggtgagaga
ggaccaccaggacctccaggtagtccaggttctcctggttttcctgggccaaaaggtgaa
aaggggcttccaggattaactggccttgtagggccaccaggattccccgggccaccaggt
gctcctgggagacctggtcctaaaggagaccctggggatgtcttggcttcaccaagaatg
aaaggtgacaaaggagagcctggcttccctggacctccaggtcttcctggaatagatggc
actcctggacgagatggattgccaggtctgcctggccctaaaggggagcctggcagtgtt
gcattcaaaggagaaatgggaattccaggtgacccaggagtaccaggtcttcctggagac
aaagggcttcctggacctcctggtttcggtccacaaggttcacctggtgaaaagggcatc
caaggtgtatcaggtcgtccagggcctcctggagttcctggtccaaaaggtgaccctggt
cagactattacagaaccaggagttcctggtccccctggtcctccaggaagaaatggtgac
ccaggtcttccaggggatcctggtcagccaggtcagcgtggcttatcaggcatcccaggt
gcaaagggagagccaggtattcctggcattggacttccaggtccaccaggcccaaaaggt
ttcccagggactccaggcccacccggagctccaggaactccaggtcgccctggcctagat
ggacctccaggaccacctggtttcccaggccagaagggggatcgtggatttggagttcca
ggaccaccaggacccccaggaccaccaggcataaaaggagttcagggacctaaaggtgat
cctggcttcccaggaaaccctggacttccaggacgggcaggttttgatgggactccagga
ccaaaaggtgaccctggaccaagcggaccaccaggccttccaggcccaccaggcatccct
ggcattggaggccaagggccacctggacctccaggaccaccaggtcctgttggcccacca
gggttgcagggcctaccaggagagaaaggggatccaggtcctccaggcttcgatgttcct
ggtcctccgggtgaccaaggaaccccaggatatccaggaccccctggcctcccaggccct
cagggttcacctggtccacctggccgggatggaatacctggatttccaggtgccaaaggt
gagatgggcgtcatgggagcccctgggcctccagggcctccagggactcctggaagaagt
ggccttcctggcttgaaaggtaataatggattgcctggcccgccagggcctcctgggcca
ttaggacagaaaggtgtcaaaggtgaagcaggcctgccaggcccacctggaaaagttgat
ccaaagcagctaggagcaaaaggagaaaagggcgagccgggtattccaggtattcctggt
ttatcagggcagaaaggctatcaaggtctcccaggtgacccaggtccaccaggactgagt
ggtccaccaggtgcaccagggttgccaggcatcaaaggagacatggggcttcctgggcag
ccaggaccaacaggacctccagggctaaaaggtgccatgggagagatgggccttccaggt
cccccaggaagtaaaggcagccagggaatagcaggacgtccagggcagcctgggcctgct
ggatttcctggactgaaaggggagaaaggtgatcctggtctttcaagtgttggcattcct
ggtctgcctggaccaaagggtgatcttggtttgcctggatatccaggtagtccaggcagt
aaaggcgtagctggaaatcctggtttgcctggattgcctggcagtccaggtgcaaaagga
gagccgggccttcctggattcccaggaacaccaggaattccaggaccaaaaggtatcgaa
gggcctccaggtaaccctggtctgcctggaccacctgggccagtaggtgatactggtcgt
cctggccctcctggtcctcctggggagaaggggcagcctggtcgagatggtatccctgga
ccagctggtcagaagggtgaaccaggtctgccaggctttgggcgcccaggacctccggga
ctcccaggattatcagggcaaaaaggtgaactggggttacctggcccaccaggaccccct
ggacttccaggtctgaagggagaaccaggtttccaaggattccctggcctacagggtcca
ccaggtccaccaggattaccagggccacctctggaaggtcctaaaggtagccctggccca
ccaggcgttccaggaagaccaggttcaccaggcccagaaggtccacgagggccaccaggc
agtgggggactcaaaggggaaaaagggaatccaggacagcctggcccacctggcctgact
ggtcaaaagggagaccaaggaccacctggacgccagggagatcctggtcgtcctggtctc
aatggaatgaaaggtgaccccggggttccaggcgttccgggattcccaggtatgaagggt
cccactggacctgcaggacctgctggcctcatgggcagtcaagggctgccaggcccacca
ggtccaccaggtttaccaggtaccatcggacgaagcattgttgtcaaaggtgaccctggt
cctccagggcctccaggattgcctgggtcaaaagggccacctggactggcagggccacaa
ggattgccaggtccagttggtgttcctggtgacccagggcgagatggactccctggtttc
gatggcccagcaggacgtaaaggagagaggggtcttccaggccaaccaggttcacgagga
atacagggaccccctggtcctgatggcttacaaggcccacctgggcctcctggaacagct
tctgttgctcatggattccttataactcgtcacagccagactagggatacaccactatgt
ccacaaggaacttcaagaatatatgatggattctctcttttgtatgtgcaaggaaatgag
agagcacatggccaggacttgggtactgctgggagctgtcttagacgctttagcaccatg
cctttcatgttctgcaacatcaacaacgtttgtaattttgcatcaaggaacgactattcc
tactggctgtcaactccagagccaatgccgatgagcatggagccactgactgggcagaac
atccagccattcattagcagatgcgttgtgtgtgaagctcctgctatggtgatagctgtc
cacagtcagaccattcagattccttcgtgtcctccaggctgggactccctatggatcggt
tactctttcatgatgcacaccagtgctggagcagagggctctgggcaggccttggcatca
cctggatcctgtttagaagaattccgctcagctccatttattgagtgtcatggtcgtggc
acttgtaactactatgccaattcatacagtttctggctggcaactgtagaggtgtcagaa
atgttcagcaaacctcagtcagagacactgaaagctggagacttgaggacgcgtattagt
cgctgccaagtttgcatgaagaagacgtaa
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integrated database retrieval system
