Tympanuchus pallidicinctus (lesser prairie-chicken): 128080820
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Entry
128080820 CDS
T08967
Symbol
CHD6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpai03036
]
128080820 (CHD6)
Chromosome and associated proteins [BR:
tpai03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128080820 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Chromo
Helicase_C
BRK
ResIII
DEAD
CHDCT2
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
128080820
NCBI-ProteinID:
XP_052539475
LinkDB
All DBs
Position
Unknown
AA seq
2736 aa
AA seq
DB search
MIMKIQKKDKQPPSLKVLSRSPMSDASDTWECKAQGPLAGSEEQQTHRATATEAGGQCLC
PEEQPDGAPLRRPSAQNGMQDTGAVGTGVKKKRKKKDLGEQEGGEKATVEMKPKRRREPK
EPKEPKKAKEPKKQKEPKQREVTKKPRKPREPKAPKEPKDRKSGSEPGPRTRPKKSSKEQ
GPTPVEKKKKGKRKNEIPVDSLDLDQDLLSPSVQSPEESAESADSQKRRSGRQVKRRKYN
EDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASRMVQKETH
PGGLTFEMEEFYVKYRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDE
DLFNPDYVEVDRILEVAHTKDPDTGEEVTHYLVKWCSLPYEESTWELEEDVDPGKIKEFE
ALQIPPEIKHMVTYPEERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC
ILADEMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGS
QISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHR
LKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDL
KTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFL
SKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAA
GKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAI
DRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAV
KVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKVEVEDLLRKGAYG
ALMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNF
WQKWAKIAELDTDAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRS
RRFNEKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCV
KHYKGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPRGRKGKKTKNQMLLPEIKNAD
WLATCNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAADKAFEGTPARELDV
LLPDIDYVEIPVDWWNAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKLLSA
EQGISDGAQDTAERGTMEKEESNGEKLEGLPKQEDVVAAGAGEAGEKRDEPSAAQDGSDS
DRSCWPVSSALTARLRRLVTVYQRCNRKELPARSEMLVPGNHGYWLQDEVFRRASEMDSV
NKEMQKRWTRREQADFYRTVSSFGVIYDQEKKTFDWTQFRAISRLEKKTDESLEKYFYSF
VAMCKNVCGLPLWKEDGPPDPDIYVEPITEERAARTLYRIELLRKVREQVLRCPQLHERL
KLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMNDPQLSFLDAYRNYAQHKRTG
IPGSESLCCLYQTNSKLYSSPLYSQVDRTCESLENETESQIKLENTDSTMSQAGGSPPDA
NCETFMSKVRDIISSNYDESSLPDSLMCMMYDEKVCNSEQSSLARDSPTCTDVGSSIAKL
SEGKLEGDEDPSSCDAEAMREASFLEGLQVGCDQMDCQNEEAEPSPSTPESDPSRSVPAE
LCEAVQQKRDLSSPAPVLSEHRAMEGVISVGLYSPSLHNYDMKVPSEQRFINLLQEKGME
AKAGPSQSHSEEDEEEEDDDNSEAAADVAEGLSGPRARASCDELGGEEQSLGLPTHEDTC
PEDVNSERGSLGLGMLEVPAEPGPEGREDHSLDEENTLQHLPGQSQSRPFSLPAPPLGAL
GTQPLHAGGEAWGQETKGQAGCREALHPVPLGVKQEECEIRDEEEKTGSSQSQDGPEKYL
EEESKSSASVLPGEIDDLQDVRAPTIAQLLQEKTLYSFSEWPKDRVIINRIDNICHAILK
GKWPSSSQQFETQSLLAAPAVASNAGSRNSFAESEAPDPSFNNGVLISQVQKEGFLNPAF
AKDERKHRRLYEFELERDAKQRSLEQLAAAHVHPPIVLNGWRDAAVDLSRASDGSPGNSS
PFPLNANMPKLGTVNTLQGSLGMDLSGILQAGLIHPVTGQIVNGSLRRDDAAMRRRRGRR
KNVEGMDLIFLKERPLPTRLQDVQDDQLQPPQNSPLPDGPAAATSTPQPVPAAGSQAEKA
VPNKSLLDWLRQQSDYTLDVPSFGTNFSDKPKQRRQRCKDPSKLDISALTGEERVPVVHK
GTGRRLGGATAPALKELPRWLDANLEYAVAADWADIVKLSGYLPESKFNRVLTEPVLRDA
GPRRRGRRPRSELIKGPGVVADSSSGMGPLFMNGLIAGMDLVGLQNMRNMQGIPLTGLVG
FPAGFAAVPAGEDVKSTLSMLPMMLPGMATVPQMFGVGGLLNPPMATTCTATAPTSLTST
TKSGTSNAEKATEDKQSSQDAKKETLSEDKPGPSSFSNQTESAITTSSPVAFNPFLIPGM
SPGLIYPSMFLSPGIGMALPGMQQARHAEAASLESQKRKRKKAKGDAANPEPETVSLPEK
EAANGQNCTEQTPPLPAEKEQDVPAEEEVKEVNDTN
NT seq
8211 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaaaaaagacaagcagccacccagcttaaaagtgctgagccgc
tccccaatgtcggatgcctcggacacctgggagtgcaaggcgcagggccccttggccggc
agcgaggagcagcagacccacagggcgacggccacagaggcaggtgggcagtgcctgtgc
cctgaggagcagcccgacggggctccgctgcggcggccaagcgcccagaacgggatgcag
gacactggggctgtgggcacgggggtgaagaagaaacggaagaaaaaggatttgggagag
caggaaggaggagaaaaagcaactgtggagatgaaaccaaagaggagaagagagcctaaa
gaaccaaaagagcctaaaaaggccaaggagcccaagaagcagaaggagcccaagcagagg
gaggtgaccaagaagccccggaaacctcgggaacccaaagctcccaaggagcctaaagac
aggaagagcggctctgagcctggccccagaacaaggcccaagaagagcagcaaggagcag
gggcccacccctgtagagaagaagaagaaagggaagaggaaaaatgagatcccagtggac
agcttggatttggatcaggatcttctgagcccatcagtgcagagccctgaggagtctgcg
gagtcggctgacagccagaaacgacgctctggccggcaggtgaagaggaggaagtacaac
gaggacctggatttcaaggtggtggatgatgatggcgagacgatagctgtgctgggagcc
gggcgaacctctgcactctctgcctccactctggcatggcaggctgaggagcctcctgag
gatgatgccaatatcattgagaagatccttgcctcaaggatggtgcagaaggagactcat
cctggaggcctgacattcgagatggaggagttctacgtcaagtacaggaacttctcctac
ctgcactgtaagtgggcaactctggaggagctggagaaggacccccggatatcccagaag
ataaagcgcttccgaaacaagcaggctcagatgaagcatatttttacagagcctgacgag
gatttgtttaacccagactatgtggaggtagatcgaattctggaggtggctcacacgaag
gaccctgacaccggagaggaggtgactcactacctggtgaagtggtgctcgctgccctat
gaggagagcacctgggagctggaggaggatgttgacccagggaagataaaagagtttgaa
gccctccaaatccctccagaaatcaagcacatggtaacgtacccagaggagcgcccagca
tctgagtcctggcagaaactggagaagtcccgagagtataagaatagcaaccagctgcgg
gaatatcagctggagggaatgaactggctgctctttaactggtataacaggaagaattgc
atcctggctgatgagatggggctggggaagacaatccagtcaatcaccttcctctcagaa
atcttcctgatgggcatccatggccccttcctcatcatcgctcccctctccaccatcact
aactgggagagggagtttcgcacctggacagagatgaatgccatcgtgtaccacggcagc
cagatcagccgccagatgatccaacagtatgagatggtgtacagggacacacagggcaac
cctctgcctgggatcttcaagttccaggtggttatcaccacctttgagatgatccttgct
gactgcccagagctgaagaagatccagtggcgctgtgtggtcattgatgaggcgcatcgc
ctgaagaacaggaactgcaagctgctggaggggctgaaacttatggccctggagcacaag
gtgctgctgacaggaacccccctgcagaactcagtggaggagctcttcagcctcttgaat
ttcctggagccacaacagtttccctcagagacagccttcctggaggagtttggggacctg
aagacagaagagcaggtgaagaagctgcaatctatcctgaagcccatgatgctgcgacgg
ctgaaagacgatgtagagaagaatctggcacccaagcaggagaccatcattgaggtggag
ctgaccaacatccagaagaaatactatcgggccattttggagaagaacttctcctttctg
tccaagggtgccaaccagcacaacatgcccaatctcatcaacaccatgatggagctgcgg
aagtgctgcaatcacccgtatctcatcaatggggcagaggagaagatcctggaagacttc
cgtaaaacacacagcccggaggcaccagacttccagctgcaggcgatgatccaggcagct
ggaaaactggtgctcatcgacaagctgcttcccaagctgattgctggtgggcacaaggtg
ctcatcttctcccagatggtgcgctgccttgacatcctggaagactatctcattcagagg
cggtacacctatgagcgaatcgatgggcgggtgcgtggcaacctgcgccaagctgccatc
gaccgcttctgcaagcctgactcagatcgctttgtcttcctactgtgcacgcgggcgggt
ggactgggcatcaacctcactgctgccgacacctgcatcatatttgattcagactggaac
ccacagaatgacctccaggctcaagctcgctgccatcggatcggacagagcaaggcagtg
aaggtgtatcgcctcatcaccaggaactcctatgagcgggagatgttcgacaaggccagc
ctgaaactgggcctggataaggctgtgctgcaggacatcaaccgcaagggcggcaccaat
ggggtccagcagctctcaaaggtggaggtggaggacctgctgcggaaaggtgcctatggt
gctctcatggatgaggaggatgaaggatccaagttctgtgaggaggacattgaccagatc
ctgcagcgcaggacgcagaccatcacaatccagtccgagggcaagggctccacctttgcc
aaggccagctttgtagcatcaggcaacagaactgacatctccttagatgaccctaacttc
tggcaaaagtgggccaaaatagcagagcttgataccgatgccaagaatgaaaaggagagc
ttggtcatcgacaggccccgtgtgcggaagcagaccaaacactacaactcctttgaggag
gatgagctgatggagttctctgagctggacagtgactcggatgagcgccccactcgctcc
cggcgcttcaatgagaagacgcggcggtacctgcgggctgagtgcttccgtgtggagaag
aacctgctcatatttggctggggacgatggaaagatatcctgacccacgggcgcttcaag
tggcacctgaacgagaaggacatggagatgatttgtcgagcactgctggtttattgtgtc
aagcactacaaaggggatgagaagataaagagttttatctgggatctcatcacaccaaca
aaggatggccagaaccaggcactgcagaatcactcaggtttgtcagcaccagtgcccaga
ggcaggaaggggaagaagacaaagaaccaaatgctgcttcctgagataaagaacgcagac
tggcttgctacatgcaaccctgaggtggtcctgcatgatgacagctacaagaagcacctc
aaacagcactgcaacaaggttctgctgcgagtgcggatgctgtactacctgaaggctgag
gtgcttggggaggccgctgacaaggccttcgagggcactcctgccagagagctggatgtg
ctgctgccagacattgactacgtggagatcccagtggactggtggaatgctgaagctgat
aaatccttgctcatcggtgtcttcaagcacggttatgagaggtacaatgccatgcgggca
gacccggcgctgtgcttcctggagaaggtgggcatgcctgatgagaagctgctttctgca
gagcagggcatcagcgatggggctcaagacactgctgaaaggggcaccatggaaaaggaa
gagagcaacggagaaaagctggaggggctgccgaagcaggaggacgttgtggctgctggg
gcaggtgaagctggcgagaagcgggatgagccatcggcagcccaggatggctccgactca
gacagatcctgctggcctgtctcgtctgccctcacagccaggctgcggcggctcgtcact
gtctaccagcgctgcaaccgcaaagagttgcctgcgcgcagcgagatgctggtgcctggt
aaccatggatactggctgcaagatgaggtgttccggagagcctctgagatggactcggtg
aacaaagagatgcagaaaaggtggacaaggagggagcaggcagatttttaccgcaccgtc
tcttccttcggggtcatctatgaccaggagaaaaagacctttgactggacccagttccga
gccatctctcgtttggagaagaaaacagatgagagcttagagaagtacttctacagcttt
gtagccatgtgcaagaatgtctgtggtctcccactgtggaaagaagatggtcccccggat
cccgacatctacgtggagcccatcacggaggagcgcgctgccagaaccctgtaccgcatt
gagctgctgcggaaggtgcgcgagcaggtgctgaggtgtccgcagctgcacgagcggctc
aagctgtgccggcccagcctctacctgcccgtgtggtgggagtgtggcaaacacgaccgg
gacctgctgatcggcaccgccaagcacggcctgaatcgcacagactactacatcatgaat
gacccgcagctgtcttttttagatgcgtacaggaactacgcccagcataaaagaacaggg
atcccaggctcggaatctctgtgctgcctgtaccagactaactccaaactctacagttcc
cctctgtatagccaggtggatcggacttgtgaatccctggagaatgagactgagagtcag
atcaagctggaaaacactgacagcaccatgtcccaggccgggggcagcccgccggatgca
aactgtgaaacgttcatgtctaaagtccgggacatcatttccagtaactacgatgagagc
tcgctgccggactcgctgatgtgcatgatgtatgacgagaaggtctgcaacagtgagcag
agctccctcgcccgagacagcccgacctgcacagatgttggaagcagcattgctaaactg
tctgagggcaagctagagggggacgaggatccatccagctgtgacgcggaggccatgaga
gaggcttccttcctggagggtttgcaggtgggctgtgaccaaatggactgtcagaatgaa
gaagctgagccttcaccttctactcctgaaagtgacccttcacggagcgtcccagcagag
ctctgtgaggccgtgcagcagaagagggacctcagcagccctgcgccggtgctgtctgag
caccgtgccatggaaggggttataagtgtggggctgtacagtcccagccttcacaactat
gacatgaaggttccttctgagcagaggttcattaatctgctgcaggagaagggaatggag
gcaaaagcaggtccaagtcaaagccacagtgaggaagatgaggaagaagaggacgatgat
aactcagaggcggcagcagatgttgcagaaggcttgagtggtccgagggccagggccagt
tgtgatgaactggggggtgaggagcagagccttggcctccccacacatgaggacacttgt
cctgaagatgtgaacagtgagagagggtccctggggctggggatgctcgaagtgcccgcg
gagcctgggccggagggcagggaagaccacagcctggatgaggagaacaccctgcagcac
ttgccaggccagtctcagagccggcctttcagcctgcctgcccctccattgggggctcta
gggacacagcccctccatgctgggggagaagcctggggccaagagaccaaggggcaggca
ggctgcagggaggccctgcatcctgtgcctctgggggtgaagcaagaggagtgtgagatc
agagatgaggaggagaaaactggcagcagccagagtcaagatggcccggagaaatatttg
gaggaagagagcaagagttcagcttctgtcctgcctggggagattgatgacctgcaggat
gtccgggcaccaaccatcgcccagctgctgcaggaaaagacgctttactccttctctgag
tggcctaaggatcgtgtgatcatcaaccgcattgacaacatctgccacgccatcctgaag
ggcaaatggccatcctccagccagcagttcgagacccagagtctgctggcagccccagcc
gtggccagcaatgctggcagcaggaacagctttgctgagtcagaagcccccgatcccagc
ttcaacaatggagtgttaatctcacaggtacaaaaggaaggcttcctgaaccctgccttt
gcaaaagatgagcggaagcacaggcggctgtatgaatttgagctggagagagatgccaag
cagaggagcttggagcagttggcagcagcccatgttcatcctcccattgtgctgaacggc
tggcgcgatgcggctgtggacctgtccagagcctctgacggatccccagggaactcctct
cctttccctctgaacgcaaacatgcccaagctggggactgtcaacaccctccagggctcc
ctgggcatggacttgtccggcatcttgcaggcggggttaatccatcctgtcacaggacaa
attgtaaatggcagcctccgaagagacgatgctgccatgaggaggagacggggcaggaga
aaaaatgtagaagggatggatctcatcttcctgaaggagaggcctcttccaaccaggctg
caggacgttcaggacgatcagctgcagccaccccagaacagccccctcccagatgggccg
gcagctgctacctcaactccgcagccagtcccagctgcaggcagccaggctgagaaggct
gtccccaacaagagtctcctcgactggctccgtcagcagtccgactacacgctcgacgtt
cccagcttcggcacaaatttttcagacaagcccaagcagaggaggcagcgctgcaaggac
cccagcaaattggacattagtgcactcacgggcgaggagcgggtgccggtggtacataag
ggtaccggacggaggttagggggagccacggcaccagcattgaaggaattgccaaggtgg
cttgatgcaaacttggagtatgctgttgcagctgactgggctgacattgttaagctttca
ggctacttaccagaaagcaaattcaaccgtgtgctgactgagccggtgctgcgtgacgcg
gggccgcgccgcagggggaggcggcccagaagtgagctcatcaaaggccccggcgtcgta
gcagattcttcttctggaatgggaccattgttcatgaacggactgattgccggaatggac
ctagtgggacttcagaacatgagaaacatgcaagggatccccctgaccgggctggtcggc
ttccctgcgggctttgcggccgtgcccgctggcgaggacgtgaagagcaccctgagcatg
ttgcccatgatgctgccaggcatggccaccgtgccgcagatgttcggcgtcggagggctt
ctcaacccacccatggcaacgacttgtaccgccaccgctccgacttccttaacaagcaca
acaaaaagtggtacatcgaacgcagagaaagctactgaggataaacagagcagccaggat
gcgaaaaaagaaactctttctgaagataagcccggccctagttcgttttctaatcagaca
gaatccgcaataactaccagtagtcctgtagcttttaacccgtttcttatcccagggatg
tcacccggactgatctatccgtcaatgtttctctcccctggcattggcatggcgctgccg
ggcatgcagcaggccaggcacgcggaggcagccagcctggagagtcagaagcggaagaga
aagaaagcgaaaggggacgcagcgaacccagaaccagaaactgtctcgctgcccgaaaaa
gaagctgcaaacggtcaaaactgtacagagcaaacaccgcctttgccagcagagaaagag
caggatgtaccagcagaggaggaggtcaaagaagttaatgataccaattag
DBGET
integrated database retrieval system
