Tympanuchus pallidicinctus (lesser prairie-chicken): 128090795
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Entry
128090795 CDS
T08967
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03013
Nucleocytoplasmic transport
tpai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128090795 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
128090795 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpai03019
]
128090795 (THOC1)
03041 Spliceosome [BR:
tpai03041
]
128090795 (THOC1)
Messenger RNA biogenesis [BR:
tpai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128090795 (THOC1)
Spliceosome [BR:
tpai03041
]
Complex C
Other components
EJC/TREX
128090795 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128090795 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
128090795
NCBI-ProteinID:
XP_052559364
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MASSARVAERRSAGAMSPPLLFSLPEARHRFTISTREALHHKTLKPVLNAFNQIPGSENE
KKCTLDQAFRVIVEEEIINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPL
DQCDKIFTFVEKNVATWKSNMFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARL
FPLSEKSGLNLQSQFNLENVTVFNTNEHESTLGQKHSEERDEGMDVEEGEMGDDEAPTSC
SIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKL
EELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLT
DEQSLWIEDTTKAVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSQP
EFQLGPPDSKPMRPARKRPAPEDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESRE
YMPTLEEFFEEAIEQADPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSL
PEYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENNESPEVQRDKPMTGEQMETF
AIRLGEHWRALAPYLEMKDSDIRQIEADSDDVKMRAKQLLVAWQDQEGVHATPENLITAL
SKAGLGDLAESLTNDTDTSS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcagcacgcgtcgcggagcgccgctcggccggagcgatgtcgccgccgctg
ctttttagcctgcccgaggcgcggcaccgcttcacgatctccaccagagaagctctgcac
cacaaaaccctcaaaccggtgttgaacgcctttaatcagattcccgggagcgaaaatgag
aagaagtgtaccctggatcaagctttcagagttatcgtagaagaggaaataataaacaaa
gctccatgtgaaaacctgttggcaattatttctcttgctattaatggagtcactgaaggt
atctgcactgcatcgacaccttttgtgcttttgggagatgttctggattgcttgcctttg
gatcagtgtgataaaattttcacttttgtggagaagaatgttgctacgtggaaatcaaac
atgttttattctgcagggaaaaactacttgctacgaatgtgcaatgaccttctaaggaga
ttgtctaaatcacaaaacacagtcttttgtggaagaattcaactgttcttggctaggttg
tttccgctatctgagaagtcaggactcaacttgcagagtcagtttaacctggaaaatgtg
actgttttcaatactaatgaacacgagagcactcttgggcagaagcactcagaggagaga
gatgaaggaatggacgtagaagaaggtgagatgggagacgatgaagcaccaacaagttgt
tccattccaatagattataacctgtatagaaaattctggtcacttcaggattactttaga
aaccctgtgcagtgctatgagaaggtctcatggaaaacttttcttaagtactcagaagaa
gttttggctgttttcaaaagttacaaattggacgacacgcaggcttcccgaaaaaagctg
gaagagctaaaaacaggtggagaacacgtgtactttgccaagttcctaaccagtgaaaag
ctgatggatttgcagctgagtgacagtaacttccgccgtcacatcttgttgcagtatcta
atactgtttcagtatctgaagggacaggtcaaatttaaaagttcaaactatgttctaaca
gacgagcagtctctttggattgaagatactacaaaagcagtttaccagcttctttcagaa
aatcctccagatggggaaagattctcaaaaatggtagagcatatattaaatactgaagag
aactggaactcatggaaaaacgaaggctgcccaagctttgtgaaagaaagatctcagcca
gagtttcagcttgggcctcctgattctaagccaatgaggcctgcaagaaagaggccagct
ccagaggacttcttaggaaaaggaccaaacaaaaaaattcttatggggaatgaggagctg
acccgactttggaatttatgtcctgataacatggaggcttgtaaatctgagagcagggaa
tatatgccaacactggaagaattctttgaagaagccattgaacaagcagatcctgaaaac
atggttgaaaataagtacaaggctgtgaacaactctaactatggatggagagcactaaga
ctgctggcacgcagaagcccccatttcttccagccaacaaatcaacagttcaagagctta
ccagaatatctagaaaacatggtaatcaaattagccaaggagctgcctcctccttctgaa
gaaataaaaacaggcgaagatgaagatgaggaagataatgatgctttattaaaggagaac
aatgaaagtccagaggtacaacgggacaaacccatgacaggggaacaaatggaaacattt
gccatcaggctgggggagcactggagagctttggccccctacttggaaatgaaggattcc
gacatccgtcagatcgaggcagatagtgacgacgtgaagatgagagccaagcagctgctg
gttgcctggcaggaccaggagggtgtacacgccactccagagaacctgatcactgcgctg
agcaaagcggggctgggggaccttgccgagagcctgaccaatgacaccgacaccagcagc
tag
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integrated database retrieval system
