Tympanuchus pallidicinctus (lesser prairie-chicken): 128092220
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Entry
128092220 CDS
T08967
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tpai
Tympanuchus pallidicinctus (lesser prairie-chicken)
Pathway
tpai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128092220 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpai03400
]
128092220 (LIG4)
Enzymes [BR:
tpai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128092220 (LIG4)
DNA repair and recombination proteins [BR:
tpai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128092220 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Motif
Other DBs
NCBI-GeneID:
128092220
NCBI-ProteinID:
XP_052561835
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MKKPTQMASAPASQLSPKRTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKF
HSALHQKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAVKL
LNYRTPTGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAAKNKGLVKK
SLLQLITQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLH
DPSVSLSDVSITLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYK
YFSRNGFDYTQQFGASPLDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQKGNKF
DIKRMVEDSDLQTCFCVFDVLMINDQKLGHESLSKRYKILSNVFTPVTGRIHVVHKKSAR
TRKEVIDALNEAIDNREEGIMIKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGG
YWGKGSRGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPY
NRKDPPCNILCGTEKPEMYIEPCNSVIVQVKAAEIVDSDMYKTDCTLRFPRIEKIREDKE
WYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKKRTVPKVKKVIGIAEQFKAPDL
SNVNKISSVFEDVEFCVMTGTGRYSKSELESKIAECGGSVVQNPGPDTYCVIVGAENVRV
KNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTADT
DVAQLKEVFSRVKDNKKMPLDLIAELEERYSWNSCQLCIFRGNTIYVDYYAIINKPSTKI
HGTRLSIRALELRFYGAKVVPILEEGVSHVVIGEDHSRVKELKALRRMFGKKFKIVSELW
VTESIKEGAPKNENQFLI
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacctacccagatggcttctgcacccgcctcacagctttctcctaaaagaaca
gtggcctcgcatgtgccttttgcagacctgtgttccaccctggagcgaatacagacgtgt
aaatcccggccagagaaaaccaagtacttcaaggatttcttagattcctggagaaaattc
cacagtgctctccatcaaaaagagaaagatgtcactgattctttctatcctgctatgcgg
cttatacttccacagctggaaagggaaaggatggcgtatggaattaaggaaaccatgctt
gcaaaactttacattgaactgcttaacttaccaaaagatggaaaggatgctgtgaagctt
ttaaattacagaacgcccaccggttcacgtggagatgctggagactttgcaatgatcgca
tactttgtgttaaaaccccgaagccctaagcgaggcaggttgactgtagagcaggtcaat
gaactgctggatgccattgcaaacaacaatgctgctaaaaacaagggactggtaaagaaa
agccttcttcaattaattacccaaagcacagcacttgagcaaaagtggctcatccggatg
attataaaggatctaaaacttggtgttagtcaacaaacgatattttcaatttttcatcct
gatgctgctgaattacacaatgtcacgacagatttggaaaaagtttgtaggcagctgcac
gacccctctgtatcacttagcgatgtttctatcacgttattttctgcctttaaaccaatg
cttgctgctattgccgacgtccagcaaattgagaagcagatgaataaccaggtattctac
atagaaactaaactggatggtgaacgtatgcagatgcacaaagatggtgatgtgtataaa
tatttttccagaaacgggtttgactatactcagcagtttggtgcttcccccctcgatggc
tcattaacaccatttattcataacgtatttaaaagtgacatacaaaattgcattcttgat
ggtgaaatgatggcttacaatcctgaaacgcaaacctttatgcaaaaaggaaacaaattt
gacatcaaaagaatggtagaggactctgatctgcagacctgcttctgtgtgtttgatgta
ttaatgataaatgatcagaagttgggtcatgaatccctgagcaaaagatacaagatctta
agtaatgtatttaccccagtaacaggcaggatacatgttgtacataaaaaaagtgccagg
acaagaaaagaagtaattgatgctttaaatgaagcaatagataacagagaggaaggcatt
atgataaaagatcccatgtccacctacaagcctgacaaacgtggggaaggctggttaaaa
atcaagccggaatatgtcaatgggctgatggatgagctagatcttcttattgttggtggt
tactggggaaaaggctcacgtggtggaatgatgtctcattttctgtgtgctattgcagag
actccagctccaaatgaaaaacctactgtattccactctatttgtcgtgttggctctggc
tacactatgaaggaattatatgatctgggtttgaaactggctaaacattggaagccttac
aataggaaggaccctccttgtaacattttgtgtggcactgaaaaacctgaaatgtacatt
gagccttgtaattctgtcatagttcaggtcaaggcagctgagattgttgacagtgatatg
tacaaaactgactgtactctgagattccccagaattgaaaaaataagagaggacaaagaa
tggtatgaatgcatgactttggacatgctagaacatcttagaagcagagcagaagggaag
ctggcatccaagcacctatatattgatgaatatgatgagccacaagagaagaaaaagaga
actgtaccaaaggtgaagaaggtaattggaatagctgaacagtttaaagctcctgatctt
tctaatgtcaacaaaatttccagtgtgtttgaggatgtagaattttgtgtgatgacagga
actggaaggtactccaagtctgaactggaaagcaaaatagctgaatgtggtggcagtgtg
gtacagaaccctggacctgacacttactgtgtcattgtaggagctgagaatgtcagagtt
aaaaacattattgcttccaacaaatatgatgtggtgaaagcagagtggcttcttcagtgt
tttcagtcaaaaatgctggtaccttggcagccagcctttatgattcacatgtctcctgac
acaagagaacattttgctcgtgagtatgattgctatggagacagctacacagcagataca
gatgttgcacaactcaaggaagtgttctcaagagtgaaggataataagaagatgcctttg
gacttgattgctgagttagaagaacggtattcatggaacagctgtcaactgtgtatattc
agaggaaacactatttatgtggactattatgctattattaacaagcccagtaccaaaatc
catggcacaagactatcaattagagctttggagctccgtttttatggtgcaaaagtagtt
cctattcttgaggaaggtgtgtcccatgttgttataggagaagatcattcccgagtaaaa
gagttgaaagctctcaggagaatgtttggaaaaaaatttaaaattgtatctgagctgtgg
gtaacagagtcaattaaggaaggagccccaaagaatgaaaaccagttcttaatttaa
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