Thermoanaerobacter pseudethanolicus: Teth39_0169
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Entry
Teth39_0169 CDS
T00649
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpd
Thermoanaerobacter pseudethanolicus
Pathway
tpd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Teth39_0169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpd03400
]
Teth39_0169
Enzymes [BR:
tpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Teth39_0169
DNA repair and recombination proteins [BR:
tpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Teth39_0169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
MFD_D3
RapH_N
RecG_dom3_C
UB2H
DUF924
IstB_IS21
UBA
Motif
Other DBs
NCBI-ProteinID:
ABY93842
UniProt:
B0KBG3
LinkDB
All DBs
Position
188252..191749
Genome browser
AA seq
1165 aa
AA seq
DB search
MFTRQIEELKEIKTIEEFLQQRKGPVLAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVE
ARKIYEDLYSFNFGNASLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSID
AAVGKLIPMDLFKKYQFVFKLGDTVNLEEVIKSLVTMGYERVQIVEGKGQFSVRGGIIDV
FSPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEAEHIKKGISAV
SNYLNSYLSKIKKPKSGIAEKLQQKFEEIMEEITESKRVENIYELIDYFYDDVYSIVDYM
GEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSKLFFDYEEILKRVKNNF
LLIMNTLAKPGNELQPQTIVNFVSRSMHHFHGNMDILVDDLKYYKNAGYKVLLLSGNQER
ARILKDTLDSFNIDTVVIKDSEYDIQKGQVVIYAASVSKGFEYVDAKFAVISDGEIFGQT
KRRKRTVKIKNADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGG
DTLFVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQ
MVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE
VALRAAFKAVADGKQVAFLCPTTILAYQHYANFIERFKEFPVKIEMLSRFRTPKEQSKII
KELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA
TPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIARGGQVYFVY
NRVNGIEKMASFVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLD
IPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEF
TEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAIGYDLYLKLLEEAIRNLKGEAPKEEIT
TTIDIKVNAYIDSSYIEDENLRLEMYKKIASIKSREDMIEISEELVDRFGDYPKPVEALL
EIAYLKAIASQVNITEITEKGNSVILKFNDMNLVNMEVIEKVIKEYGGNLVFSSQVQPYL
TYKFNKKETLQKELIELVEKIKSLQ
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtttactcgccaaatagaagaattaaaagagattaaaacaatagaagaatttcttcaa
cagaggaagggacctgttttggcttatgggcttacagattctcaaaaagcccatattgcc
cattatataatgactaagtttaacaaaaaggtgttagttattgctcctgatgaggtggaa
gcaagaaaaatatacgaagatttgtattcttttaattttggcaatgcttctttatttcct
aaaagagaagccttgttttataaaatagatgctgcgagtcaagaagtggtgtctcagaga
ttgcaggtaattaaaaaattgtcagaagaaagtccccatgctgtagttacttctatagat
gcagcagtaggcaagctcatacctatggatttgtttaaaaagtatcagtttgtttttaaa
ttaggtgatactgtaaatttagaagaagttataaaaagtttggtgaccatggggtatgaa
agggttcaaatagtggaaggaaaagggcaatttagtgtgaggggaggaataatcgatgtt
ttttctcctacggaagaatatccttataggattgaactttttgacgatgaaatagattcc
ataaggacttttgatgtgattacccaaaggtctttagaaaatattgataaaataaatatt
tttccagctacagagtttatcgcagaggcagagcacatcaaaaaggggatttcggcagtt
tcgaactatttaaattcctatttgtcaaaaataaaaaaaccgaaaagtggtattgcagaa
aaattacagcaaaaatttgaagaaattatggaggagattacggaatctaaaagggtagaa
aatatttatgagcttatagattatttttatgatgacgtttattctattgttgactatatg
ggagaagatgcagttattattttagatgaaagcagtcgcattaaacaaagggtaaataac
cttcaaatggaatttaatgaaaatttcaaggctttgttagaaaaaggagaggttttgcca
gagcaaagtaagcttttttttgattatgaggaaatattaaaaagagtgaaaaataatttt
ttactcataatgaatactttagcaaagccaggcaatgagttacaacctcaaacgattgtt
aattttgtatcaaggtctatgcatcattttcacggcaatatggatattttagtagatgat
ttgaagtattacaaaaacgcaggatataaagtgttgcttttaagtgggaatcaagaaaga
gcaagaattttaaaagatactcttgacagttttaatattgatactgtagtgattaaagac
agtgaatacgatatacaaaaagggcaagtggtcatatatgctgcctctgttagcaaggga
tttgagtatgtggatgcaaaatttgctgttataagcgatggagaaatttttggtcagact
aaaaggagaaaaagaactgtaaaaattaaaaatgctgacaagataaagagctttactgaa
ttagaaatagggtcatatgttgtgcatgtaaattatggcataggaaagtatgaaggcata
gaaaagataaaagtagatggaattgtaagggattatttaaaaataatttatgcaggggga
gataccctttttgtaccagtagaacaattagaccttgtgcaaaaatatgtgggtcctaca
gacaatcctcctaaattaaataaattagggggtagtgaatggcttagagcaaaaagaaaa
gcaaaaaaagcagtggaagaccttgctaaggatttgatacaactttacgccaaaaggcag
atggtgaaaggacatgctttttctcctgatactccatggcaaaaggagtttgaagagcaa
tttccctatgaagagacagaagaccagttaaggtgtataaaagaaattaaagaggatatg
gaaaaagacaggccaatggatagacttctttgtggagatgtgggatatggtaaaacagaa
gtggctttaagggctgcctttaaagcggtggctgatgggaaacaggtggcttttttgtgt
cctactactatacttgcttatcaacattatgctaattttattgaaaggtttaaagaattt
cctgtaaagatagagatgctcagccgttttagaactcctaaagaacagagtaagataatt
aaagagttagcggaaggaaatatagatattatagtaggtactcataggcttttacaaaat
gatataaagttcaaagatttaggacttttaattatagacgaagaacagaggtttggagtt
gttcataaagaaaaaataaaaaaacttaaggaaaatatagacgttttgacattatcagca
actcctattcccaggactttacacatgtccttgattggtataagggatatgagtgtattg
gagaatcctcctgaagacagatttccagtagaaacctatgtagtggaatttaatgaagaa
ttaataaaagatgctattttaagggaaattgcaagagggggacaagtctattttgtttac
aatagggtaaatggcatagaaaagatggcttcttttgtaaaagatttagttcctggttgt
agagtagctgtggctcatgggcaaatggaagaaagtcaattagaaaaagtgatgattgac
tttctaaatggggaatacgatgttttagtaagtactacaataattgagacagggcttgat
ataccaaatgtaaatactattatagtttatgatgccgataagttagggctttcccaattg
tatcaattaagaggaagagtaggtaggtcaaatagacttgcttatgcctattttacctat
agaaaggataaagttttaagtgaagtggcggaaaaaaggttggaggcgataaaagaattt
actgaatttggttctggatttaaaattgccatgagggatttggagataagaggtgcaggc
aatctcctaggagcagaacaacatggccatattgatgctattggttatgacttgtattta
aaacttttagaggaggctatacggaatttaaagggagaagctcccaaagaggagattact
accacaatagacataaaggtcaatgcttatattgattcttcctatattgaagacgaaaat
ttaagattggagatgtacaagaaaatagcctctataaaatctagagaagatatgatagag
atttcagaagagcttgtagataggtttggcgattatccaaagcctgtagaggcactattg
gaaattgcctatttaaaggctattgcctctcaagtcaatattaccgaaataactgaaaaa
gggaattctgttattttaaagtttaatgatatgaatttggtaaatatggaggttatagag
aaagtaataaaggagtatggagggaatttagtattttcaagtcaagtacagccatacctc
acttataaattcaataaaaaagagactctgcaaaaagaacttattgaattggtagaaaaa
ataaaaagtttgcagtga
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