Treponema pedis: TPE_2372
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Entry
TPE_2372 CDS
T02803
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tped
Treponema pedis
Pathway
tped03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tped00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPE_2372 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tped03400
]
TPE_2372 (mfd)
Enzymes [BR:
tped01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPE_2372 (mfd)
DNA repair and recombination proteins [BR:
tped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TPE_2372 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
RecG_dom3_C
Phytase
Motif
Other DBs
NCBI-ProteinID:
AGT44846
UniProt:
S6A4W2
LinkDB
All DBs
Position
complement(2442701..2446207)
Genome browser
AA seq
1168 aa
AA seq
DB search
MSSRTIQSLQNNILTWCGMKTAFTQIESGAYPFNIAGLSGGLLGFFLAEYFYKTKRSVLI
IVPTEKEVEQVLADLDFSNIETRVLPWWGSLAYRPVSPSSSVFAERAEILSLLLQAGEEG
GETDGSVSKKSDEKNPRIFITCQRSFLTPVPPGEYLKKNKCSLAVGGAVDILKVAELLTS
WGYTRVPRVSVRGEFALRGEVLDVCLASNTSSLKNAYRIQFDFDKIEKIKTFDVNSQSSL
EEIKSVTFFPAKEVIWDKERISVLEKNLKNLKEFSPDALRIIERLKTYKTFEGEEIFYPL
CFEKQTSILDYFPKKDITVFYIDYDRQKNFFETLSREYLGLYKKAKNQFDENEKRKAVIP
EFPEPQHILFQFDKLSQNYTRSVFFKTLNEKSSLSGEESFIKFYTEPARSFFGNIVYLKE
ELKALLNSGWTVYVFAESDNQALRIQEILHESAVHVLPFNLSAGFSIPELKILVIHENEI
FGRRRRIPKSVKTAKSSVIDTFIELNPGDYVVHVNYGIGKFRGIERVKIADTERDYINLL
YANDETVFIPIEQADMVQRYIGNEGEAPHLDVLGSKSWENRKTRVKKSVEDIAAKLIDLY
SRRKASKGFAFQKDDEWQLSFEAAFPYEETDDQLTCIEDVKADMEKPVPMDRLICGDVGY
GKTEVAMRAAFKAAMSGKQVAFLSPTTILTEQHFETLNKRFKNFPVKIARLSRFISKGEQ
KKVLEKLKQGEIDVLVGTHRIIQKDVVFKDLGLMIIDEEQRFGVKDKEKLKALKHNVDCL
SLSATPIPRTLHMSLLKIRDMSVITTPPQNRKPVETVIEEFNAEKIAEVIRRESARGGQV
FYLHNRVETLEDTLFMLQSLLPEIMIETAHGQMSPNELEEIFERFSLGGFQVLIATTIIE
NGIDIPNANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPEDRALSEVAMKRLQV
ISDFTELGSGFKIAMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLQNGNYE
PMQESVIELEYSGFIPDSYINIPETKMEVYKKIAAVKTQEDLDGIYAEISDRFGPAPEEV
ESLLALSEIKIICNTLSISSLKERKSKVRVEFARVSKISVDKLLRMIKESDGRVTLDPKA
PNVLILQTGKIGLKEKSEFIREKLGRLM
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcggacaattcaatctttgcaaaacaacatcttaacgtggtgcggtatgaaa
accgcttttactcaaattgaaagcggagcatatccttttaatattgcaggtctttcaggc
gggcttttaggcttttttttggcggaatatttttataaaaccaaacgctccgttttgata
attgttccaacggaaaaagaagtggaacaggttttagccgatttggatttttcaaatata
gaaacccgtgttttaccgtggtggggaagtcttgcatatagaccggtttcaccttcttct
tcggtttttgcggaacgggctgaaattctctctcttcttttgcaagcgggagaagaaggc
ggggagactgacgggagcgtatcaaaaaaaagtgatgaaaaaaatccgcgtatttttata
acttgtcagcgctcgtttttaacgccggtgcctcccggagaatatttaaaaaaaaataaa
tgctctttagccgtaggaggcgcggtagatattttaaaagttgcagagcttttaacttct
tggggttacacaagagttccgcgtgtaagcgtgaggggcgagtttgccttacgaggtgaa
gtgttggacgtatgtcttgcttcgaatacttcttcgttaaaaaatgcatatagaattcaa
tttgattttgataaaattgaaaaaataaaaacctttgacgtaaacagccaaagctctctt
gaagaaataaagtcggtaacctttttccctgcaaaagaagttatttgggataaagaacgt
atttcggttttggaaaaaaacttaaagaatttaaaagagttttcacctgatgccttacgc
ataatcgaaagacttaaaacttataaaacatttgaaggcgaagaaattttttatccgctt
tgttttgaaaagcaaacttcaatactggattatttccctaaaaaagatataacggttttt
tatatcgattacgacagacaaaaaaatttttttgaaacattgtctcgggaatatctgggg
ctttataaaaaagcgaaaaatcaatttgacgaaaacgaaaagcgtaaagccgtaattccc
gaattccccgaacctcagcatattttatttcagttcgataaattaagtcaaaattatacg
cgttccgtcttttttaaaaccctgaacgaaaaaagttctttaagcggcgaggagtctttt
ataaaattttatactgaacctgcaagaagttttttcggtaacatagtttacttaaaggaa
gaactaaaagctcttttaaattccggctggacggtttacgtatttgcggaaagcgataac
caagctctgcgtattcaggaaattttgcacgaatctgccgttcatgttttaccctttaat
ctttcggcgggtttttcaattcctgaacttaaaattcttgtaattcacgaaaacgaaatt
ttcggacggcgaagaagaatcccgaagtcggtaaaaaccgcaaaaagcagcgtaatagat
acatttatagaattaaatcccggcgattatgttgttcatgttaattacggcataggaaaa
ttccgcggcatagagcgcgtaaaaattgccgataccgaacgcgattacataaatctttta
tatgcaaacgatgaaaccgtttttattccgattgaacaggccgatatggttcaacgttat
atcggaaatgaaggcgaagcgccgcatcttgatgtgctgggttcaaaatcatgggaaaac
cgcaagaccagagtaaaaaaatcggtggaagatattgcggcaaagttaatagacttatat
tcaaggcggaaagcaagcaaggggtttgcgtttcaaaaagacgatgaatggcagcttagc
tttgaagccgcctttccttatgaggaaacggacgaccagcttacctgcattgaagacgta
aaagcggatatggaaaaacccgtccctatggatagacttatttgcggtgatgtaggttac
ggaaaaaccgaagttgcaatgcgggcggcttttaaagctgcaatgagcggtaaacaggtt
gcatttttatcgcctactacaattttaaccgaacagcattttgaaaccttaaataaacgt
tttaaaaattttcccgtaaaaattgcacgtctttcaagatttatttctaagggtgaacaa
aaaaaggttttggaaaaattaaaacaaggcgaaatagatgtacttgtaggcacacatcgt
attattcaaaaagacgttgtttttaaagatttgggtttaatgattatagatgaagagcag
cgtttcggagttaaagataaagaaaaactgaaagccttaaaacataatgttgattgtctt
tcgctttcggcaactcctattccgcgtacgcttcacatgtcgcttttaaaaatacgcgat
atgagcgtaattacaacgccccctcaaaaccgtaaaccggttgaaacggtaatagaagaa
ttcaatgcggaaaaaattgcggaggttatcaggcgtgaatcggcgcgcggcggacaggtc
ttttatctccataacagagtcgaaactttggaagatactctttttatgcttcaatcgctt
ttgcccgaaattatgattgaaaccgcacacgggcaaatgtctccgaacgaattggaagaa
attttcgaacgtttcagtttgggcggttttcaagttttaattgcaactacaattatagaa
aacggaatagatattcccaatgcgaatacgattataatcgacagagccgatatgtacgga
gtttctcaattgtatcagctgcgcggaagggtggggcgttcggataaaaaagcttatgcc
taccttttgtatccggaagatagagccttatcggaagttgctatgaagcgcttacaggta
atttccgattttacggagctgggttccgggtttaaaattgcaatgaaggatatggaaata
cgcggagcggggaaccttttgggacgtgagcagtcgggagatatttattccgtcgggttt
gatttatatttacgtcttttagatgaagctgtgcaaaagctgcaaaacggaaattacgag
cctatgcaggaatccgttatagaacttgaatactcaggttttattcccgattcatatata
aacattccggaaactaaaatggaagtttataaaaaaattgcggcggtaaaaactcaggaa
gatttggacggtatttatgccgaaatttccgaccgcttcgggcctgcgcctgaagaagtg
gaaagcttattggctctttccgaaattaaaattatttgcaatacgctttcaatttcaagt
ttaaaagaaagaaaatcgaaggtaagagtggagtttgcccgcgtttctaaaatttccgtt
gataaacttttacgtatgataaaagaatcggacggaagagtaacgcttgaccctaaggct
ccgaatgttttaattcttcaaacagggaaaataggtttaaaagaaaaaagcgagtttatc
cgtgaaaaattaggccggctgatgtaa
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