Tetrapisispora phaffii: TPHA_0C01290
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Entry
TPHA_0C01290 CDS
T02235
Symbol
TPHA0C01290
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPHA_0C01290 (TPHA0C01290)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpf03019
]
TPHA_0C01290 (TPHA0C01290)
Messenger RNA biogenesis [BR:
tpf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TPHA_0C01290 (TPHA0C01290)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TPHA_0C01290 (TPHA0C01290)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
11534077
NCBI-ProteinID:
XP_003684719
UniProt:
G8BRA9
LinkDB
All DBs
Position
3:complement(294072..296432)
Genome browser
AA seq
786 aa
AA seq
DB search
MAHRKLQQEVDKIFKKINEGLEIFDTYYERRENCTNNPSQKEKLESDLKREVKKLQRLRE
QIKSWQSSPDIKDKDSLLDYRRSVEIAMEKYKAVEKASKEKAYSNNSLKKSDNLDPEELE
RREVSDYLSQQIDELERQHEILQTEVDKLLLLQKKKKTATTPNAEKKEALKAFQNRYRWH
QQQMELALRLLANEELDPQDVIDIKDDINYFVESNQDPDFLEDESIYDNLNLQSNEAIAH
EVAQSFAAQRADERDTEEDSFSKDAGGISKKDQRKLEREARKAAREAAKEPSTSTQSGEE
SEQSSSVRNGNDNVVTIERVPSNAKSNSTSPSPSLDNFNSPELSPANITAPSTAKSSGTP
KLPYLKTTPLAATKPNTPASDGQRHQHIQIHNGVTTTTTLKPATIPIRPAGELKWAAAAS
QAMEKTKKPSLPSLSPVPTTPTQATSKLGQTLKPNSSTPVLSNNIFNQPVKKTGMVSSLI
NTSDTAINQLSEPSDDVVVDNSDLKQLDNQNQSTLSKNGYFIYDDYVSDVSDDEISVDKQ
FKLPSTQTLIERENKINEIKTKYAQHYELITLPNGIQQYILGRILHDNNLNVLNGKLGGY
RKSLDTISIPRLDSVPIGVNPPTPLDAFKSTHQWDMVRTSLSGSLSSEGSVLLMDSILEK
FRNLDSFTLFYNFYFSVTSMERDIAAKILVERNWIQLSNGVMWFLRQGNIKFANENSEVA
DYKIFKADDWTVVEKLNFKLDYDSIMDPVPKTVLNESVNSENNNDADSLSHGKQLLQQLN
RGKIAT
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggctcataggaagttgcaacaggaggtagataaaattttcaagaagatcaatgaaggt
cttgaaatttttgacacttattatgaaagacgagagaattgtacaaataatccatcgcag
aaagaaaaattagaatctgatcttaaaagagaagtcaagaagttacagaggctaagagaa
caaataaagtcatggcaaagttctccagatataaaggataaagattctcttcttgattac
agaagatcggtagaaatagcgatggaaaaatataaggctgtggagaaagcttcgaaagag
aaggcatattcgaacaatagtttaaaaaaatcagataatctggatccagaagaattagaa
cgaagggaggtctccgattatctgtcgcaacaaattgatgagttagaaagacaacatgaa
attttacagacggaagtagacaaacttcttcttcttcagaaaaagaagaagacagcaacc
acccctaatgctgaaaagaaagaggcactaaaagcatttcagaatagatacaggtggcat
caacaacaaatggaattagctcttcgactgcttgctaatgaagaattagacccacaggat
gtcattgatataaaggatgatatcaattattttgttgaatcgaatcaagatccagacttt
ttggaagacgaatctatatatgataatctaaacctacaatcaaatgaagccatagcacat
gaagttgctcaatcttttgctgcacaaagagcggatgaacgagatactgaggaggattca
ttcagtaaggatgcggggggcatttcaaagaaagatcaaagaaagttagaaagagaggca
agaaaggctgcaagagaggctgcaaaagagccatctacaagcacccaaagtggagaggaa
tcggaacaaagttcaagtgtacgaaatggaaatgataatgtagtaacgatagaacgtgtt
ccatccaatgcaaagagtaattctacatctccttcaccctcattagataattttaactcg
ccggagctttcgcctgctaatataactgcaccaagtacagctaaaagctcaggtactcct
aagttaccatatttaaaaaccactccattggctgccacaaaaccaaatactccagcgtct
gacggtcaaaggcaccaacatattcaaatacataatggcgtaaccacaacaaccacactc
aaacctgcaactattccaattagaccagcaggtgaattaaaatgggcagctgcggcatct
caagcaatggaaaagaccaagaaaccatcattaccatcattatctccagttcctaccaca
ccaactcaagcaacttcaaaattgggacaaacactaaaacctaactcatcgacacctgta
ttatcgaataacatttttaatcaaccggtgaagaagactggaatggtttcatctctcatc
aacacttcagatacagctattaatcagttaagtgaaccaagtgatgatgtagtagttgat
aattcagatctaaaacaactggacaatcagaatcaatcaacgttaagtaagaatggatat
ttcatctatgatgactacgtctctgatgtctctgatgatgaaatatcagtagacaaacaa
tttaaactgccatctacacaaactttgatagagagagagaacaaaataaatgaaattaaa
acaaaatacgctcaacattacgagcttataactcttccaaatggtatccaacagtatatt
ttaggaagaatattacatgataataatcttaatgttttaaatggaaaattgggtggttat
cgaaaatcattagacaccatttctattccaagattagattcggtacctattggcgtcaat
cctccaactccattggatgcatttaagagtacccatcagtgggatatggtacgtacttca
ttaagcggaagtctctcatctgaggggtcagttttattaatggattcaattttagagaag
tttaggaatttggatagttttacacttttctataatttttatttttcggttacttcaatg
gaaagggatattgctgctaagattctagttgaaagaaattggatacaattaagtaatgga
gttatgtggtttctaagacaaggtaatattaaatttgcaaatgagaatagcgaagtagct
gattacaaaatttttaaagcagatgactggaccgttgttgaaaagttaaactttaaatta
gattacgactctataatggaccctgttcctaaaacagtattgaatgaaagcgtaaactcc
gaaaataataacgatgccgatagtttaagtcacggcaagcaactactacaacaattaaat
cgcggcaaaatcgccacataa
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