Tetrapisispora phaffii: TPHA_0D04570
Help
Entry
TPHA_0D04570 CDS
T02235
Symbol
TPHA0D04570
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tpf
Tetrapisispora phaffii
Pathway
tpf03030
DNA replication
tpf03410
Base excision repair
tpf03420
Nucleotide excision repair
tpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TPHA_0D04570 (TPHA0D04570)
03410 Base excision repair
TPHA_0D04570 (TPHA0D04570)
03420 Nucleotide excision repair
TPHA_0D04570 (TPHA0D04570)
03430 Mismatch repair
TPHA_0D04570 (TPHA0D04570)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpf03032
]
TPHA_0D04570 (TPHA0D04570)
03400 DNA repair and recombination proteins [BR:
tpf03400
]
TPHA_0D04570 (TPHA0D04570)
Enzymes [BR:
tpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TPHA_0D04570 (TPHA0D04570)
6.5.1.6 DNA ligase (ATP or NAD+)
TPHA_0D04570 (TPHA0D04570)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
TPHA_0D04570 (TPHA0D04570)
DNA replication proteins [BR:
tpf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
TPHA_0D04570 (TPHA0D04570)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
TPHA_0D04570 (TPHA0D04570)
DNA repair and recombination proteins [BR:
tpf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
TPHA_0D04570 (TPHA0D04570)
NER (nucleotide excision repair)
Other NER factors
TPHA_0D04570 (TPHA0D04570)
MMR (mismatch excision repair)
Other MMR factors
TPHA_0D04570 (TPHA0D04570)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
11534581
NCBI-ProteinID:
XP_003685525
UniProt:
G8BS16
LinkDB
All DBs
Position
4:996539..998749
Genome browser
AA seq
736 aa
AA seq
DB search
MAIGRLQTTIFRQLSYCRPFVSSLRFGTASLLYTRTMSNSLEPSKKQATLARFFTSMGKK
TPPAVEVATKQESPENHVDKKRKVEVHPSQSVGASEKAESPPDQTKSTVLYSEVCNLFQQ
IEETSSRLAIIKLCSEFFIRVIKNNPSDIIIVAYLFINRLGPDYEPGLELGLGENLLIKT
ISEAYGKSIKQIKLELKETGDLGTIARDARNIQPTMFKPKPLTISDVFNNLKKIASATGK
DSQLRKIKLIKQMLSASKGLEAKFLIRSLESKLRIGLAEKTVLISLSKALLLHEHWKEKG
ESKFDEEDVESMDLIEQAEAKLREAHCQVPNYEIVINLCLQDGILNIDKTCTLRPGIPLK
PMLAKPTKAITEVLNAFQGKEFISEYKYDGERAQVHLLEGGEMRIYSRNGENMTERYPEL
DVKDFLCVVKAITNDQEGENAIQPVKDIILDCEVVAWDVEQKKILPFQVLTTRKRKNVDL
KDVKVRVCLFAFDLLYLNNEGMINKSLRERQEILRKVTVLVPGEFQYATSLITSDMDELQ
TFLDQAVKNSCEGLMVKMLDGEESHYEPSKRSRNWLKLKKDYLDGVGDSLDLVVMGAYFG
KGKRTGSYGGFLLGCYNEDTQEFETCCKIGTGFSDEMLGNLHTLLQPTEIDNPPMTYIYD
SSAEPDVWFQAKVLFEVLTADLSLSPVYKAGNSRYDKGISLRFPRFLRIREDKDVTDGTT
SEDIIEFYESQSHIQN
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggctatagggagattacagacgactattttcagacaactatcatattgcagacctttt
gtttcgtcattacgttttggaacagcatcgctattatatacacgcacaatgtctaattca
ctggaaccttccaaaaaacaggctacgctggcaaggtttttcacctccatgggtaagaag
actcctcccgcagtggaagtggctacgaaacaagaatctccagagaatcatgtagataaa
aagagaaaagtggaagtccatccatctcagtctgtcggtgcttcagagaaagctgaaagt
cccccagatcaaaccaagtcgacggtgctgtattcagaggtttgtaacttgttccagcag
attgaagaaacgtcctctcgtttagcaataatcaagctatgttcggagtttttcattaga
gtgatcaagaataatccatcagatataatcatcgttgcgtatcttttcatcaacagacta
ggtcccgactatgaaccgggtctggagttagggttgggtgaaaatctgttgataaagaca
attagcgaagcatatggtaagtccatcaagcaaataaaactggagttgaaagaaacaggg
gatttgggcactattgcacgcgatgcaaggaatatccagccgaccatgtttaaaccaaaa
ccgttgacaatctcagacgtgttcaacaacttgaagaaaatcgcaagcgccactggtaag
gactcgcaattgaggaaaattaagttaataaaacaaatgttatctgcatctaagggtttg
gaggcaaagtttctaatcagatcattggaatcaaagcttagaattgggctagcggaaaaa
acggtcttgatatcgttgtcgaaggcactgctgctacatgaacattggaaagagaaaggg
gaaagtaaattcgatgaagaagatgtcgaatccatggacttaattgaacaagctgaggca
aaattaagggaagcacattgtcaagtacctaattatgaaattgtcattaacttatgttta
caagatggtatcctgaatattgacaaaacttgtaccctgagacctggtatcccattgaaa
cctatgttagcaaaaccaacaaaggcaattacagaggtcctgaacgctttccaaggcaaa
gagtttatttctgaatacaagtacgacggtgaaagagcacaggtacatctgttggagggc
ggtgaaatgagaatatattcccgtaacggtgaaaacatgactgagagatacccagaactg
gatgtgaaagacttcttgtgtgttgtgaaggccatcaccaacgaccaagaaggagaaaat
gcgatccaaccagtgaaggacattatcctagattgtgaagttgtggcttgggatgtcgaa
cagaaaaagattctaccattccaagtgttgaccacaagaaaacgtaaaaatgtcgacttg
aaagatgttaaagtccgtgtctgtctgtttgcatttgatttactatacttgaataacgaa
ggaatgattaacaagagtctaagagaaagacaagaaattttgcgtaaagtcacagttctt
gtaccgggagagttccaatatgcaacttctcttatcacgtctgatatggatgagttacag
acgttcttagatcaagccgtcaagaattcatgtgaagggttaatggtcaaaatgttggat
ggtgaagagtcgcattatgaaccaagtaagagatcgcgtaattggttaaaattgaagaag
gattatctggatggtgttggcgattcattagatcttgtagtgatgggtgcttattttggt
aaaggtaaaagaacaggttcgtatggtggattcttattaggatgttacaacgaagacaca
caagagttcgagacatgttgtaaaatcggtactggtttttcagatgagatgctagggaac
ttacacacactcctgcaacctactgaaatcgacaatccaccaatgacgtacatatatgat
tccagtgcagagcccgacgtttggtttcaagcaaaggtgctgttcgaagtgctgaccgct
gatttgtcattgtctccagtgtacaaagcaggcaattcaaggtacgacaaaggtatctcg
ttgagatttcccagattcctaagaatcagagaggacaaagacgtgactgacggaacgact
tctgaagacataatcgaattctacgagagtcaatcccacatacagaattga
DBGET
integrated database retrieval system
