Treponema phagedenis: FUT81_04105
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Entry
FUT81_04105 CDS
T06342
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tphg
Treponema phagedenis
Pathway
tphg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tphg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FUT81_04105 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tphg03400
]
FUT81_04105 (mfd)
Enzymes [BR:
tphg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FUT81_04105 (mfd)
DNA repair and recombination proteins [BR:
tphg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FUT81_04105 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
ERCC3_RAD25_C
RecG_dom3_C
SSV1_D-63
IstB_IS21
UB2H
Motif
Other DBs
NCBI-ProteinID:
QEK08705
LinkDB
All DBs
Position
896275..899721
Genome browser
AA seq
1148 aa
AA seq
DB search
MQALTNLQTKIHSWKAMQTARAQFEAQTFPYTVRGSSGGLDAFVLFEYVKTFRDSIILVV
PTEKEIETVRADLDVSGLTAEVLPWWGSIAYRPIPNAAPVFAERAQVLSELASLSKESKK
IFIIPQRSFLTLVPPKEYIKTLCKHVSVGMEIDTVSISEQLIRWGYTRVPRVSLRGEFAL
RGEVLDVCTGANTGSAQIAYRIVFDFDTIEKIKSFDLSSQATLDDFSSLMLYPMKEVLWD
DERIDCLEENLAALPEFSEDALKIIEELRIKRGFEGEEIFYPLCFQKPASVLDYIDSDSV
SVFYLDFDRQKNAAEVLEREYIGLYKKARQALDESQRRKTLLTEYPEPHRILLNFTAVHS
AYRRSLYFRTIAQAEPEETTVSFNSEPPRSFFGNIVYLKEELEHLLKDGWKIWVFAESEN
QALRLSEILKDFAVDILPFNLSAGFGISELKLLVIQENEIFGRRRRIPKSVKQVKSSVID
TFIELNPGDYVVHVNYGIGLFKGIERVRSGGTERDYINLLYANEETVFIPIEQANLVQRY
IGNEGEAPRLDILGSKSWENRKNKVKKSVEDIANKLIDLYSRRKAARGHAFQPDDEWQLA
FEAAFPYEETDDQLTCVAEVKADMEKPVPMDRLVCGDVGYGKTEVAMRAAFKAIMGGKQV
AFLSPTTILAEQHFETLDERFKNFPVTVARMSRFITRSEQKKILEQLKNGDIDILVGTHR
IIQKDVVFKDLGLMIIDEEQRFGVKDKERLKQMKTNVDCLALSATPIPRTLHMSLLKIRD
MSLLTTPPQNRRPIETVIQEFDPEKVAAAIRQEVERGGQVFYLHNRVETLDETARMLQNL
VPEVLIDSAHGQMNSDELEDIFKRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADMYG
VSQLYQLRGRVGRSDKKAYAYLLYPKDRALSEIAMKRLQVISDFTELGSGFKIAMKDMEI
RGAGNLLGREQSGDIYSVGFDLYLRLLEEAIERLQNADYEPPQEVLVELDYTGFIPDSYI
SVPETKMEIYKKIAAVHTSEGLDRMYAEIIDRFGQPPEEVESLLALAEIKITCNKLAISS
LKERGGRVNIEFMRVSRISIDKLLRMIKQSAGRVRLDSAKPNVLILETGTIGLKEKSEFI
SEKLGQLV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgcttaccaatttacaaactaagattcatagctggaaggctatgcagactgct
cgtgcgcaatttgaggcacagacttttccgtatactgtgcggggctcatcgggcgggctt
gatgcttttgtgctttttgaatatgtaaaaacatttcgggacagtattatccttgtggtg
cccaccgaaaaggagatagaaactgtccgcgctgatttggatgtttcgggtttgacggcg
gaggttttgccctggtggggcagcattgcttaccgccctattccgaacgctgctccggta
tttgcggagcgggcgcaggtgctttcggagcttgcctccctttctaaggaatcaaaaaag
atttttattataccgcagcgctcgtttttaacgctggtgccgccgaaggagtatatcaaa
actttgtgcaagcatgtttcggtcgggatggagattgacacggtcagtatttccgagcag
ctgatacgttggggctatacccgcgtgcctcgggttagtttgcgcggcgagtttgctctg
cgcggcgaggtgcttgatgtttgtaccggcgcaaataccggctcggcgcaaattgcctac
cgtattgtgtttgattttgacacaatcgaaaaaataaaatcctttgatctgagttctcag
gcaacccttgatgatttttcttcacttatgctgtatccgatgaaagaggtgctttgggac
gatgagcgcattgactgtttggaagaaaatttggcagcgcttcccgaattctccgaagat
gcgctgaaaataatcgaggagctgcggataaaaagaggatttgaaggagaggaaatcttt
tatccgctttgctttcaaaaacccgcctcggtattggattatattgattcagattctgtt
tcggttttttatcttgactttgaccggcaaaaaaacgccgccgaagtgctggagcgggaa
tacatcgggttgtacaaaaaggcgcgccaagctctcgacgaaagccagcggcggaaaacc
ttattgaccgaatatcccgagccgcatcgaattttgcttaattttacggcggtgcacagt
gcgtaccgccgctctttgtatttcagaacaattgcgcaagcggagcctgaagaaacaact
gtcagttttaactcggagccgccgcgcagttttttcggaaacattgtgtatttaaaagaa
gagcttgagcatttgctgaaagacggttggaaaatctgggtttttgcggaaagcgaaaat
caggcactcaggctttccgaaattttaaaagattttgccgttgacattcttccctttaat
ctctccgccggattcgggattagcgaattaaagctgctggtgattcaggaaaatgaaatc
ttcggtaggcgcagaaggattcctaaatccgtgaagcaggtaaaaagctcggtgattgat
acctttatcgagctgaacccgggcgattatgtggtacatgtgaattacggcatcgggctg
tttaagggcattgagcgggtaagaagcggcggcaccgagcgggattatatcaatctctta
tatgcaaatgaagagacggtgtttattccgattgagcaggcgaatttggtgcagcgttac
atcggcaatgagggcgaagcgccgcgtttggacattctcggatcaaagtcttgggaaaac
cgaaagaacaaggtaaaaaaatcggtagaggacattgcaaacaaactgatagatttatat
tcgcgcagaaaggcggcgcgcggacatgcctttcagcccgatgatgaatggcagcttgcc
tttgaagcagccttcccttacgaagaaacggatgaccagcttacctgcgtggcggaagta
aaggcggatatggaaaagcctgtgccgatggacaggcttgtttgcggcgatgtcggctac
ggcaaaaccgaagttgccatgcgcgccgcattcaaagcgataatgggcggtaaacaggtt
gcctttttatcgcctaccacgattttagcggagcagcattttgaaacgcttgatgaacgg
tttaaaaattttccggtaaccgttgcccgcatgtcccgttttattacccgctccgaacaa
aaaaagattctggagcagctgaaaaacggcgatattgatattttagtaggcacgcaccga
attatccaaaaagatgtggtgttcaaagacctcggtttaatgattatcgatgaggagcag
cgcttcggcgtaaaagataaggagcggctgaagcaaatgaaaaccaatgttgactgcctt
gccctcagtgcaacgcccattccgcgcaccctccacatgagtttgcttaaaatacgcgat
atgagtttgctgaccacgccgccgcaaaacaggcgcccgatcgaaacggttattcaggaa
tttgaccccgaaaaggttgccgccgccatacgccaagaagttgagcgcggcggacaggtg
ttttatttgcataacagagtagaaactttggacgaaacggcgcgtatgctgcaaaacctt
gtgcctgaagtgcttatcgacagcgcacacgggcaaatgaattccgatgagcttgaagat
atttttaaacggtttaacatgggcggctttcatgtattgattgcgaccaccattatcgaa
aacggtattgatattccgaatgcaaacaccatcattattgatcgcgcggatatgtacggc
gtttcgcagttgtaccagctgcgcggcagggtaggacgctccgataaaaaggcgtatgcc
tatcttttataccccaaagaccgggcgctttctgaaattgccatgaagcggctgcaagtt
atctcggactttaccgaactcggctcaggctttaaaattgcgatgaaagatatggaaatc
cgcggcgccggcaacctgctcggcagggagcaatccggcgacatttactcggtagggttt
gacctctatctgcgcctgttggaagaagcgattgagcggctgcaaaatgccgactatgag
ccgccgcaggaagttcttgttgaacttgattacacgggctttattcccgacagttatatt
tccgtgccggaaacaaaaatggaaatctataaaaaaattgcggcggtgcatacctcagaa
ggacttgaccgcatgtacgctgaaattatcgatcgcttcggacagccgcccgaagaagtg
gaaagcctgctcgccctcgccgaaattaaaataacctgcaacaagctggcaatctcctcg
ctgaaagagcgcggcggcagggtcaacattgaatttatgcgcgtttctcgcatctccatt
gacaaactcttgcgcatgataaaacaatccgctggaagagtccgccttgacagcgcaaaa
ccgaatgtcctcatcctcgaaaccggcaccatcggcttaaaagaaaaaagcgaattcatc
agcgaaaaactggggcaactggtgtaa
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