Tsukamurella paurometabola: Tpau_0201
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Entry
Tpau_0201 CDS
T01228
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tpr
Tsukamurella paurometabola
Pathway
tpr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tpau_0201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpr03400
]
Tpau_0201
Enzymes [BR:
tpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tpau_0201
DNA repair and recombination proteins [BR:
tpr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tpau_0201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ADG76855
UniProt:
D5UQM2
LinkDB
All DBs
Position
complement(213125..215461)
Genome browser
AA seq
778 aa
AA seq
DB search
MAQTRENREVDGVHVQLTNLDKVLYPATGTTKAEVIDYYQAIAPVAVPHLRDRPLTRKRW
PNGVDKTAFFEKRLPSHAPAWIRRGAQHHSDGESLYPVVENTADMVWLGQQAALELHVPQ
WTFIADGENEEPGPPDRLVLDLDPGPGSTLDDCAALALRIRDLLAAMGLDGHPVTSGSKG
MHIYSTLPGGLSSPGARKVAHAIASQLEAESPELVTASMSKDQRGGRIFVDWSQNSGSKT
TISPYSLRGREHPWVAAPRSWDELSRPGLQQLEFHDVLARVRTSGDLLAPLLSGTPAPPE
PVDLDEYRAKRDAAKTPEPFGGAASTGDPIFVIQEHHARRLHYDFRLEHDGVLASWAVPK
NLPDDPAVNHLAVRTEDHPMDYAAFEGSIPKGEYGGGDVSIWDHGTYELEKWRKDEVIVT
LHGARLRGLRYALIRTGEKNWLAHLTKDKTAPAKAAAAQAPDPMLPSESTIDRLSGEDWA
FEGKWDGYRIMATVRGGALSLRTRSGRVVTGEFPEFESLARDLDGMDVVLDGEAVVLDDA
GVPSFHLMAGGESRTGAVRLYLFDVLELNGVDLTKRPWSVRREVLESLAPLLDSDDSIGV
PALVEASTGLVAATLSAERGWEGIVAKRRDSPYLPGQRVRAWLKHKNWRDLQVAIGGWKP
GKGSRANRIGSVLVGLPAETGLVYLGSVGSGLRDRDLDALAQRLEPLRMKRSPFTASIDD
PDARDAVWVLPQVVGDVRYSSLRRGGHLRQPSWRGFRDDLLPGDLPGEAEIPWEGPDE
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcagactcgggagaaccgtgaggtggacggcgtccacgtgcaactgaccaacctc
gacaaggtgctctacccggccaccggtaccacgaaggccgaggtgatcgactactaccag
gcgatcgcccccgtcgcggtcccccacctgcgcgaccggccgctcacccgcaaacgctgg
cccaacggcgtcgataaaaccgccttcttcgaaaagcgcctccccagccatgccccggcc
tggatccgccgcggcgcccagcaccactccgacggcgaatcgctctatcccgtggtcgag
aacacggccgatatggtgtggctgggacagcaagccgcgctcgagctccacgtaccgcag
tggacgttcatcgccgacggcgagaacgaggagccgggcccgcccgatcgcctggtcctc
gacctcgatcccggccccggcagcacgctcgacgattgcgccgcactcgcgctgcgcatc
cgcgatctgctcgcagccatgggactggacgggcacccggtcaccagcggctccaagggc
atgcacatctattcgaccttgcccggcggcctcagcagcccgggcgcgcggaaggtggcg
cacgccatcgcgtcccaactggaggccgagtcaccggaactggtgaccgcctccatgtcg
aaggaccagcgcgggggccgcatcttcgtggactggtcgcagaacagcggatccaagacc
acgatctcgccgtattcgctacgcgggcgcgagcatccgtgggtggcggcaccccgcagc
tgggacgaactgtcccggccgggcttgcagcagttggagttccacgacgtgctggcccgc
gtgcggacgagcggcgatctgctcgctccattgctctcgggcacaccggcaccgcccgag
ccggtcgacctcgacgaataccgggctaagcgcgatgccgcgaagacgccggaacccttc
ggcggcgcggcgagcacgggcgatccgatcttcgtgatccaggaacatcacgcgcgccgc
ctgcactacgacttccgcctggaacacgacggcgtactcgcttcctgggcggtgccgaag
aacctgcccgacgatcccgcggtgaaccacctggccgtgcgcaccgaggaccacccgatg
gactacgccgccttcgagggcagcatcccgaagggggagtacggcggcggcgatgtgagc
atctgggaccacggcacctacgaactggagaagtggcgcaaggacgaggtgatcgtcacg
ctgcacggcgcgcgactgcgcggactgcgctacgccctcatccgcacgggcgaaaagaat
tggctcgctcacctgaccaaggacaagaccgcaccggcgaaggccgcggcagcgcaagca
ccggatccgatgctgcccagcgaatccacgatcgaccggctctccggcgaggattgggcc
ttcgagggcaagtgggacggctaccggatcatggcgacggtgcgcggcggcgcgctgagc
ctgcgcacccgatcgggccgggttgtcaccggtgagttccccgaattcgagtcactggcc
cgcgatctcgacggaatggacgtggtcctcgacggtgaagctgtagtgctcgacgatgcg
ggcgtaccgtcgttccacctcatggcggggggcgagagccgtaccggcgcggtacggctc
tacctgttcgacgtcctcgaactgaacggtgtcgacctcaccaagcggccctggtcagtg
cggcgggaggtattggaaagtcttgcaccacttctagattccgacgactcgatcggcgtt
ccagcattggtcgaggcctccacgggactggtggccgcgaccctgagcgcggaacgggga
tgggaggggatcgtcgccaaacgtcgcgactcgccgtatctgcccggacagcgggtgcgg
gcctggctcaaacacaagaactggcgcgatctgcaggtggcgatcggcggctggaagccg
gggaagggttcgcgcgcgaaccggatcggatccgtcctggtgggtctgcccgcggagacc
ggtctggtctatctgggctcggtggggtcgggcttgcgcgaccgcgatctggacgcgctc
gcgcagcgactggaaccgctgcgaatgaagcgctccccgttcaccgcctccatcgacgat
ccggacgctcgcgatgccgtgtgggtgttgcctcaggtggtgggtgatgtccgctattcc
tcgctccgcaggggcgggcacctgcggcagcccagctggcgcggtttccgcgacgatctg
ctcccgggcgacctccccggcgaggcggagatcccgtgggaggggcccgacgaataa
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