Trifolium pratense (red clover): 123886375
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Entry
123886375 CDS
T08949
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpra03016
]
123886375
Enzymes [BR:
tpra01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
123886375
Transfer RNA biogenesis [BR:
tpra03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
123886375
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Gene cluster
GFIT
Motif
Pfam:
Wyosine_form
Flavodoxin_1
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
123886375
NCBI-ProteinID:
XP_045791656
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All DBs
Position
LG1:complement(41774340..41780189)
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AA seq
651 aa
AA seq
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MPLSSVSTRLTLLALFSATTFYCIYKSRRLRNLKLNLSLNPNPNTNTKLNLPKILFISET
GTSKSLANRLHRFLSLNDVAFEIIDGRSYEPEDLPKETILLIVASTWEDGKPPPAYRFFA
DWLAESSEDFRVGSLLLSKCRFAVFGVGSRGYGETFNAVGKEIVKRMKALGGAEMIPLFE
GDVDGGDVDEVFDKWCVKVVELLKGGGGEDGGDLENGEEECGVLSSDEEESDDEEEEEVE
SDIVDLEDIAGKAPSRKSVATVAETNGKLNGGKKQMVTPVIRANLVKQGYKIIGSHSGVK
ICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWQWEM
DDPLEIVNSAIEQHTNMIKQMKGVPGVTLERLNEGFTPRHCALSLVGEPIMYPEINALVD
ELHRRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFIDS
LTALKEKHQRTVYRLTLVKGWNAEEVDAYYNLFSIGEPDFIEIKGVTYCGSTATSKLTME
NVPWHADVKAFSEALALKSQGEYEVACEHVHSCCVLLAKTKKFKIDGQWYTWIDYEKFHD
LVASGSTFDSKDYMAATPAWAVYGAEEGGFDPAQLRYKKERHHKSSRKESG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgccgttatcttcagtctctactcgtctcacactccttgctctcttctccgccacaact
ttctactgcatctataaatctcgccgtttaagaaacctcaaactaaacctctctctaaac
cctaaccctaacactaacactaaactcaatctccctaagatacttttcatttccgaaacc
ggaacttccaaatccctcgctaaccgtctccaccgttttctttccttaaacgacgtcgca
tttgaaatcatcgatggacgaagctacgaacccgaagatctccctaaggaaacgatcctt
ctcatcgttgcttccacttgggaagacggaaaaccaccgcctgcttatagattttttgct
gattggcttgctgagagttctgaagattttagagttggttcgttgttgctttctaagtgt
aggtttgcggtgttcggtgtcggtagtcgaggttatggtgagacttttaatgcggttggt
aaggagattgttaaacggatgaaggcgttgggcggtgctgagatgattccgttgtttgaa
ggggatgttgatggtggtgatgtggatgaggtttttgataagtggtgtgtgaaggttgtt
gaattgttgaaagggggtggtggtgaggatggtggtgatttggagaatggggaggaggaa
tgtggtgttttgagttctgatgaagaggagtctgatgatgaggaggaggaagaggtggaa
tcggatattgttgatcttgaagacattgccggtaaagctccttcgaggaagtccgtggct
acggtggcggagactaatgggaagttgaatggtggcaagaaacaaatggtgactcctgtg
ataagagcaaatttggtgaaacagggatataagattattggttcacatagtggtgtcaag
atttgtagatggactaagtcacagcttcgtggtcgaggtggttgttacaagcattcattt
tatggaatcgagagtcataggtgcatggaggcaacccccagcttggcatgtgcaaataaa
tgtgttttctgctggaggcatcacacaaatccagtagcaaaaagttggcagtgggagatg
gacgatccattagagattgtaaattctgcaatagagcagcatacaaatatgattaaacaa
atgaaaggagttcccggagtcaccttggagcgattaaatgaaggattcacaccacggcat
tgtgcactttctcttgttggtgaacctattatgtatccagagataaatgcactagtggat
gagttgcacagaaggaggatttccacttttctagttacaaatgcacaatttccagagaaa
attaagtcgctgaagccaatcactcagttatatgtcagtgttgatgccggaacaaaggac
tctctaaaggcaattgatagaccactctttggagatttttgggaaaggtttattgattcc
ttgactgctctgaaggaaaaacatcagcgtactgtataccgtctgacccttgtgaaaggt
tggaatgctgaagaggttgatgcctattataatctctttagtataggagaacccgacttt
attgaaatcaagggagtaacatattgtggctcgaccgctacatcaaaattgacaatggaa
aatgtcccttggcatgccgacgtgaaagctttctcagaggctctggctctgaaaagccaa
ggggagtatgaagttgcctgtgagcatgttcactcatgttgcgtgcttttagcaaaaact
aagaagttcaaaattgatggccagtggtatacatggatagactatgagaaatttcatgat
ctggtggcttctggaagtacttttgacagcaaagattatatggctgccacaccagcttgg
gctgtctatggagctgaggaaggtggatttgatccagcacaattaagatataaaaaagag
agacatcacaagtcgagtcgcaaagaatcaggttag
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