Trifolium pratense (red clover): 123888925
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Entry
123888925 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123888925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123888925
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123888925
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123888925
Complex B
123888925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
123888925
NCBI-ProteinID:
XP_045794042
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All DBs
Position
LG6:complement(40507068..40513922)
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AA seq
1119 aa
AA seq
DB search
MEEGKHKSRKEDSDSKRSHRDGDRERTGGRGKDRSDGRHKDNTEKRDRESRRHYREKSID
YEDKHDRDREKPRDVKEKDRARVHDVDREKRDRKRERGREEKEKERVREKERDMEDKEKE
RMREKDRERERKEEKERIREKERARERRDHEREKEREKERDKGKRGREQEREKHRDVDSE
NSDGELRERNRKRHKTEDGSYKGREKEKSSSKSNKINGSPRRKSDGDDSDSKGKEKRLTR
EEKMEVEQKRLDDEIVKRRRRVQASQELKRKQEESEREKQGGASVSELESGKAWTLEGEE
SDDEDGTGRHTSMDVDEDDKLADNEPRESMVVDVDNGTVASDLHNGDTADDEIDPLDAFM
NSMVLPEVEKLQNAVNSTLDKASDFKPKDKEDERSNGRQSRKRSNKSIGRIIPGEESDSD
YADPDVEGDPLDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEISKMTLE
EVVLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMPIQAQALPVIMSG
RDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFT
KVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMD
EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV
NKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSL
HGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFNVPNHYEDYVHRVGR
TGRAGRKGCAITFISEDDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEKAHG
TGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQ
ISNGGLPVSLPPVLGLQTPVLPGTGLPVAANDGAARAAIAAINLQHNLAKIQSEALPEHY
EAELEINDFPQNARWKVTHKDTLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEG
RSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggaagagggaaaacataaatcgaggaaagaagacagtgattctaagaggagtcaccgt
gatggagatcgtgaaagaactggtggaagaggtaaggatagaagcgatggtaggcataag
gataatacggagaagagggatcgtgaatctcgacggcattacagagagaaaagcattgat
tatgaggataagcatgatagagacagggagaagcccagggatgttaaagagaaggatagg
gcacgggttcatgatgtcgaccgagaaaagagagacagaaaaagggaaagaggtagagaa
gagaaagaaaaggagagagtaagagagaaagaaagagatatggaagataaggaaaaggag
agaatgagggagaaagacagagagagggaaagaaaggaggagaaggagaggattagagag
aaagaaagggcaagggaaaggagggatcatgagagagagaaggaaagagaaaaggaaaga
gataaaggaaagagaggacgggagcaggagcgggagaaacatagagatgttgatagcgaa
aatagtgatggtgagttgagggagaggaatagaaagcggcataagacagaggacggcagt
tataaggggcgggagaaggaaaagagttctagcaagtcaaacaagattaacggaagccct
aggagaaagagcgatggagatgactctgattccaaagggaaagagaaaagacttacccgt
gaggagaaaatggaagttgagcaaaagaggttggatgatgaaatagtaaagcgaaggagg
agagttcaagcgtcgcaagagctaaagaggaagcaggaagagtcagaaagagaaaagcaa
ggtggagcaagtgtttctgaactagagtctggaaaggcgtggacacttgaaggggaggaa
tctgatgatgaagatggaacaggtagacatacgagtatggatgtagacgaagacgataaa
cttgctgataatgaacctagggagtcaatggtggtagatgttgacaatggaacagttgca
tccgatttacataatggagatactgctgacgatgagattgacccattggatgctttcatg
aattctatggttcttcctgaggttgaaaagttgcagaatgctgttaactcaacacttgat
aaagcttctgactttaaacccaaggataaagaggatgagcgtagtaatggtcgacaatca
aggaaacgttcaaataaatctattggcaggataattcctggtgaagagtccgactcagat
tatgcagatcctgatgttgagggggatccattagatgaagatgacgacgagttcatgaag
agagtgaagaaaacaaaagttgaaaagctttcgatagttgaccactcaaagattgactat
ataccattcaaaaagaatttctatattgaagtgaaagagatctcaaagatgactctcgaa
gaagttgtgttatacaggaagcagttagagttgaagatacatggaaaggatgtgcccaag
cctgtaaagtcatggaaccagactggacttactagcaaagttttagagacaataaagaag
gcaaactttgaaaagccaatgcctattcaagctcaggcattgcctgtaattatgagtggt
cgagattgcataggcattgccaaaactgggtcaggtaaaacacttgcttttgttctgcca
atgttgaggcatataaaggatcagccaccagttgttgcaggagatggacctattgggctt
attatggccccgacaagagaacttgttcaacagattcatagtgacataaagaagtttaca
aaggtaatgggtatcaggtgtgttcctgtctatggaggttccggtgttgctcaacaaatc
agtgagttgaaacgtggtactgagatagtagtttgtactccaggtaggatgatcgacata
ctgtgtaccagtagtggaaaaataactaacctgcgcagagtgacttatctggtcatggat
gaggcggatcgaatgtttgacatgggttttgaacctcaaatcacaagaattgttcagaat
attcggccagatcgtcaaacagttctcttctctgccactttcccgcgccaggttgaaatt
ttggctcgcaaggttttaaataaacctgttgaaatacaagttggtgggaggagtgttgtg
aacaaagatatagcacagttagttgaggtgaggccagaaaatgagaggttccttagactc
ttggaactacttggagaatggtacgagaaaggaaagattttggtatttgtccactcacag
gataaatgtgatgcattgttcaaggatctaatgaaacatggctatccatgtctttctctt
catggggctaaggatcagacagaccgcgaatccacaatatctgattttaaaagcaatgtc
tgcaatttgttggttgcaacaagtattgctgccaggggattagacgtcaaggagctcgaa
ttggtgatcaattttaatgttccaaaccactatgaagattatgtacatcgtgttgggcgc
actggccgtgctggccgaaaaggttgtgccatcacatttatttctgaagatgatgcaaga
tatgcaccagatctggtgaaagctttggagctatccgagcagattgttcctgatgatctg
aaatcccttgccgatggctttatggcaaaagtgactcaaggactggagaaagcccatggg
actggttatggaggcagtggctttaaatttaatgaagaggaagatgaggtgaggagggct
gcaaagaaagctcaagccaaagaatatggatttgaagaagacaagtcggattctgaagat
gaagatgatggtattaggaaggcaggaggtgatatttcacagcaccctgctcttgctcag
atttcaaatggtgggctacctgtttctttgccacctgttcttggtctccagactccagtt
ttgcctgggacagggctacccgttgctgcaaatgatggggcagctcgagctgcaatagct
gctataaacctgcagcacaacttggcaaaaatacaatctgaagcattgccagagcattat
gaggctgagttggaaataaatgatttccctcagaatgctcgctggaaagtcacgcacaag
gatactttaggccccatttctgagtggactggagctgctattaccacaaggggacagtat
tttccacctggcaaagtcgcaggacccggggatcgcaaactctacttgttcattgagggt
cgtagtgagcagtcagttaagagagccaaagtagaattgaagcgtgttttggaagacatc
actaaccaggctttgcaactacctggtggaactcaaccaggcaaatactctgttgtataa
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