Trifolium pratense (red clover): 123906838
Help
Entry
123906838 CDS
T08949
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123906838
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123906838
Spliceosome [BR:
tpra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123906838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
AAA_22
IstB_IS21
PhoH
nSTAND3
Motif
Other DBs
NCBI-GeneID:
123906838
NCBI-ProteinID:
XP_045812806
LinkDB
All DBs
Position
LG2:complement(21883280..21891528)
Genome browser
AA seq
1161 aa
AA seq
DB search
MATTNTQLILSSLQPRHHHSFSLLPTTFSFSFLRYPLSFSFNSPTSPLRTAISIKPNSSL
SRHPDEDEDEEEEDEDDEDEDDDDEDIAADEYEDVVSGEASDEDEVVNVDEFSRYDDGFK
WQRVEKLCNEVKEFGVGIIDVDELASVYDFRIDKFQRQAIEAFLRGSSVVVSAPTSSGKT
LIAEAAAVATVARGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSSVNKDAQVLI
MTTEILRNMLYQSVGNVSYGSGLVNVDVIVLDEVHYLSDISRGTVWEEVVIYCPKKVQLI
CLSATVANPDELAGWIGQIHGGTELVTSLKRPVPLNWHFSLKNFLLPLLDDKGTQMNRKL
SLKYLQLQAAIPYKDDSPRKRNSRRRGTRTSYDGDDSMLEERSLSKNDINAIRRSQVPQI
IDTLWHLQSRDMLPAVWFIFSRKGCDAAVQYVENCKLLDECEASEVQLALKKFRIKYPDA
VRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVIS
SLSKRSDSGRTLLTSNELLQMAGRAGRRGIDESGHVVLVQTPNEGAEECCKVLFSGLEPL
VSQFTASYGMVLNLLGGGKAIRRSNTSDEMKPSSGKTLDEARKLIEQSFGNYVSGSVMLA
AKEEVNRIEKEIQLLRSEITDEAIDRKSRKALPQRQYKEIAELQEDLRAAKRVRAELRKQ
KEAERISALKPFLEESENEHLPFLCLQYRDSGGVQHSIPAVFLGKVNSLGASKLKNMISS
VDSFALNSADADSELNLDPLPSYHVALGSDNSWYLFTEKWIKTVYETGLPDVPLVQGDTR
PREIMSGLLDKEDMKWDNLAQSEHGGLWFTDGALETWSWSLNVPVLSSFSENDEVLLKSQ
AYRDASEQYREQRKKVARLKKNISRTEGYREYNKILDAVKFTEEKIKRMKTRSKRLTDRI
EQIEPSGWKEFMNVSNVIRETRALDINTHVIFPLGETASAIRGENELWLAMVLRSKILLE
LKPAQLAAVCAGLVSEGIKVRPSNKNNYIYEPSSTVVNVIELLDDQRSALLAVQEKHGVT
ISCCLDSQFCGMVEAWASGLTWKEIMMECAMDDGDLARLLRRTIDLLVQIPKLPDIDPLL
KRNARAASDVMDRPPISELAG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaccaacactcaacttatcctctcatcactccaacctcgccaccaccattct
ttctctctcctcccaactactttctcattctctttcctccgttatcctctctctttctcc
ttcaactccccaacctcacctctccgcaccgccatttccatcaaaccaaactcttccctc
tctcgccatcccgacgaagacgaagacgaagaagaagaagacgaagatgatgaagatgaa
gatgatgatgatgaagatattgcagctgatgaatacgaagatgttgtgtccggtgaagct
tcggatgaagatgaagtggttaatgtcgatgaattttctcgttacgatgatggattcaaa
tggcaaagagttgagaagctttgtaatgaagttaaagagtttggtgttggaattattgat
gttgatgaacttgcttctgtttatgatttccgaatcgataagtttcagcggcaagcgatt
gaagcttttctgagaggttcgtcggtggtggtttctgctccgacgagtagtggaaagaca
ttgattgcggaggctgcagctgttgctacggtggctaggggacggcgtttattctacacg
actcctctcaaagctttgtctaatcagaagtttcgcgaatttcgggagacctttggtgac
aataatgttggccttcttacgggtgattcttctgtcaacaaggatgctcaggttttgatt
atgaccacggagatattacgcaacatgttgtatcagagtgttggtaatgtttcttatgga
agtggacttgtcaatgttgatgtcattgttttggatgaagttcattaccttagtgacata
tctcgcggtacagtttgggaagaagttgttatttattgcccaaaaaaagttcaacttatt
tgtctctctgcaaccgttgcaaatccagatgagttggctggttggattggtcagattcat
ggtggaacagagttggtaacatcgttgaagcgtccagttcctctgaattggcatttctct
ttgaagaatttcctattaccacttcttgatgataagggcacacagatgaacaggaagctg
tcactcaaatatttacaacttcaagctgcaataccttacaaggatgattcgcctagaaaa
aggaattccaggagacgtggaactcgcacaagctatgatggtgatgatagcatgttggaa
gaacgttctctttcaaagaatgatataaatgcaattcgtcgatcacaagttcctcaaata
atcgatacgttatggcaccttcagtctagggatatgcttccagctgtttggtttattttt
agcaggaaaggttgcgatgcagctgtgcaatatgttgaaaattgcaaacttttagacgag
tgtgaagcaagtgaggttcaactagccttgaagaagttccgcattaagtatcctgatgct
gtccgagaaactgctgtgaaaggacttctgcaaggggttgctgcacatcatgctggatgt
ctacctttgtggaaggctttcatagaagaattgtttcaaagaggacttgtcaaggttgtt
tttgctactgaaacccttgctgctggaatcaatatgcctgctagaacagctgttatttca
tccctcagcaaaagaagtgatagcgggcgcaccctattgacctcaaatgaactgcttcag
atggctgggcgtgctggacgtagaggcattgatgaaagtggtcatgtagtcctcgtccaa
actcctaatgaaggcgctgaagagtgctgcaaggtacttttttctggacttgagcctctg
gtgtcgcagtttactgcttcatatggaatggttttgaatcttcttggtggtgggaaagcc
atccgtaggtcaaacacatcagatgaaatgaaaccttcctcagggaaaactttggatgaa
gctaggaagttaattgagcaaagttttggaaattatgttagtggcagtgttatgctagct
gctaaagaggaagttaatagaattgaaaaagaaattcagttgttgaggtcagaaatcact
gatgaagccatagatagaaaaagtaggaaggctttaccacagcgacaatacaaggaaatt
gcagaattacaggaagatttaagggcagcgaaacgtgttcgggctgaattgcgaaaacag
aaggaagcagagagaatatctgccttgaaaccgtttttggaagagtccgaaaatgaacat
ttaccatttttgtgcttgcagtatagagattctggaggagttcaacattcaattcctgct
gtgtttttggggaaggtcaactccctcggtgcttcaaaactcaaaaacatgatcagttct
gttgattcttttgcattaaattcagcagatgcagattctgaattgaatctagatccttta
ccatcttatcatgtagctcttggctccgataactcttggtatctatttacagaaaagtgg
atcaaaacagtatatgagacaggccttcctgatgttcctttagttcaaggagatacgcga
cctcgagaaattatgagtggtctccttgataaggaggacatgaagtgggataaccttgct
cagtctgaacacggtggtttatggttcacggacggagctctggagacatggtcgtggagc
ttgaacgttcctgttttgagtagcttctctgaaaatgatgaggtactactgaaatctcaa
gcatacagagacgcatcggaacaatacagggagcaaagaaaaaaagtcgcacgtttgaaa
aaaaatatctctcgtactgaaggctatagagaatataataaaatcctagacgcagtcaag
ttcaccgaggagaaaatcaagagaatgaagactagatccaaacgtttgactgatcggata
gaacaaattgaaccctcaggttggaaggagtttatgaacgttagcaatgtaatacgtgag
accagagcattagatattaacacacatgtcatatttccgttaggggaaactgcttcagca
attcgtggagaaaatgagctttggcttgcaatggttcttcgtagcaaaattttactagaa
ctaaaacctgcacaacttgctgcagtgtgtgcaggtttggtatctgagggtataaaagtc
agaccatcaaataaaaacaattacatttatgagccttcttcaactgtagtcaatgtcatc
gagttattggatgaccaaagaagtgccctattggcagttcaggagaaacatggagtaaca
atttcttgctgtttggatagccagttttgtggtatggttgaagcctgggcttctgggttg
acatggaaagaaataatgatggaatgtgcaatggatgacggtgatcttgctcgtcttctt
cgtcggaccattgatctattagttcagattcctaaattgccggatattgatccattgttg
aagcggaatgcaagagctgcttctgatgtcatggaccggcctccaataagtgaacttgct
gggtag
DBGET
integrated database retrieval system
