Trifolium pratense (red clover): 123910451
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Entry
123910451 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123910451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123910451
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123910451
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123910451
Complex B
123910451
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
123910451
NCBI-ProteinID:
XP_045817508
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All DBs
Position
LG2:complement(31756062..31761282)
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AA seq
1151 aa
AA seq
DB search
MEEGKHKSSDSKRSHRDRDRTGERGKDRNDGRHKDNREKRDRESRRHDREKSTDSEDKHD
RDREKRRDGKEKDRARVHDVDREKRDRKRERDREEKEKERVREKEKEREEKEKERLREKE
RDREDKEKERMREKERERERREEKERIREKERAREKRDHEREKEKEKERDKGRRGRERER
EKHRDVDSDNSDGELRERNRKRHKKDDDSYKGREKEKSSSKSNRKVDGINGSPRRKSDGD
DSDSKEKEKRLTHEEEMEVEQKRLDDEMEKRRRRVQEWQEQKRKQEEAEREKQGELESGK
AWTLEGEESDDEDGTGRHTSMDVDEDDKLADNEPRESMVVDIDNGTVASDLQNGDAGAPA
DDEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKASDLKPKDKEDERSNGRQSRKGSNKSI
GRIIPGEESDSDYADPDVEGDPLDEDDDEFMKRVKKTKVEKLSLVDHSKIDYIPFKKNFY
IEVKEISKMTLEEVVLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMP
IQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTREL
VQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKI
TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK
PVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDSLFK
DLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVP
NHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQIVPDDLKSLADGFM
AKVTQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKA
GGDISQHPALAQILAATKAPPVPTPISATQLISNGGLPISLPSVVGLQTPTVLPGTGLPL
ATHDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISE
WTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLP
GGTQPGKYSVV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaggaaaacataaatcgagtgattctaagaggagtcatcgagatcgtgataga
actggtgaaagaggtaaagatagaaatgatggaaggcacaaagataatagggagaagagg
gatcgtgagtctcgaagacatgacagagagaaaagtactgattctgaggataagcatgat
agagacagggagaagcgcagagatggtaaagagaaggatagggcacgggttcatgatgtc
gaccgagaaaagagagataggaaaagggaaagagatagagaagagaaagaaaaagagaga
gtaagagagaaagaaaaagagagagaagagaaggaaaaggagagattaagggagaaagaa
agagatagggaagataaggaaaaggagagaatgagggagaaagaaagagagagggaaaga
agggaggagaaggagaggattagagagaaagaaagggcaagggaaaagagggatcatgag
agagagaaggaaaaagaaaaggaaagagataaaggcaggagaggacgggaacgagagcgg
gagaagcatagagatgttgatagcgataacagtgacggtgagttgagggagagaaataga
aagcgacataagaaagacgacgacagttataaggggcgggagaaggaaaagagttctagc
aagtcaaacaggaaagttgatggaattaacggaagccctaggagaaagagcgatggagat
gactctgattccaaagagaaagagaaaagacttacccatgaggaggaaatggaagttgaa
caaaagaggttggatgatgaaatggaaaagcggaggaggagagttcaagagtggcaagag
caaaagaggaagcaggaagaggcagaaagagaaaaacaaggtgaactagagtctggaaag
gcatggacacttgaaggggaggaatctgatgatgaagatggaacaggtagacatacgagt
atggatgtagacgaagacgacaaacttgctgataatgaacctagggagtcaatggtggta
gatattgacaatggaacagttgcatccgatttacagaatggagatgctggtgctcctgca
gacgatgagatcgacccattggatgctttcatgaattctatggttcttcctgaggttgaa
aagttgaacaatgctgttaactcaacaccttctgataaagcttctgacttgaaacctaag
gataaagaggacgagcgtagtaatggtcgacaatcaaggaaaggttcaaataaatctatt
ggcaggataattcccggtgaagagtccgactcagattatgcagatcctgatgttgagggg
gatccattagatgaagatgacgacgagttcatgaagagagtaaagaaaacaaaagttgaa
aagctttctttagttgatcactcaaagatcgactatataccattcaaaaagaatttctat
attgaagtgaaagagatctcaaagatgactcttgaagaagttgtattatacaggaagcag
ttagagttgaagatacatggaaaggatgtgcccaaacctgtaaagtcatggaaccagact
ggacttactagcaaagttttagagacaataaagaaggcaaactttgaaaagccaatgcct
attcaagctcaggcgttgcctgtaattatgagtggtcgagattgcataggcattgccaaa
accgggtcaggtaaaacacttgcttttgttctgccaatgttgaggcatatcaaggatcag
ccaccagttgttgcaggagatggacctattgggcttattatggcccctacaagagaactt
gttcaacagattcatagtgacataaagaagttcacaaaggtaatgggtatcaggtgtgtt
cctgtctatggaggttctggtgttgctcaacaaatcagcgagttgaaacgtggtactgag
atagtagtttgtactccaggtaggatgattgacatactgtgcaccagtagtggaaaaata
actaacctgcgtagagtaacttatctggtcatggatgaggcagatcggatgtttgatatg
ggttttgaaccacaaatcacaagaattgttcagaatattcggccagatcgtcaaaccgtt
ctcttctctgccactttcccacgccaggttgaaattttggctcgcaaggttttaaataaa
cccgttgaaatacaagttggtgggaggagtgttgtgaacaaagatatagcacagttagtt
gaggtgaggccagaaaatgagaggttccttagactcttggaactacttggagaatggtat
gagaaaggaaagattttggtatttgtccactcacaggataaatgtgattcattgttcaag
gatctaatgaaacatggctatccatgtctttctcttcacggggctaaggatcagacagac
cgtgaatccacaatatctgattttaaaagcaatgtctgcaatttgttggttgcaacaagt
attgctgccaggggattagatgtcaaggagctcgaattggtgatcaattttgatgttcca
aaccactatgaagattatgtacatcgggttgggcgcactggccgcgctggccgaaagggt
tgtgctatcacatttatttctgaagatgatgcaagatatgcaccagatctggtgaaagct
ctggagctatctgagcagattgttcctgatgatctaaaatccctcgccgatggctttatg
gcaaaagtgactcaaggattggagcaagcccatgggactggttatggaggcagtggcttt
aaatttaatgaagaggaagatgaggtgaggaaggctgcaaagaaagctcaagccaaagaa
tatggatttgaagaagacaagtcagattctgaagatgaagatgatggtattaggaaggca
ggaggtgatatttcacagcaccctgctcttgctcagattcttgctgcgaccaaagctcct
ccagtgcctactcctatctctgcaacccaactgatttcaaatggtgggctacctatttct
ttgccatctgttgttggtctccagactccaacagtcttgcctggtacagggctacccctt
gctacacatgacggggcagctcgagctgcattagctgctataaacctgcagcacaacttg
gcaaaaatacaatctgaagcattgccagagcattatgaggctgagttggaaataaatgat
ttccctcagaatgctcgctggaaagtcacacacaaggaaactttaggccccatttctgag
tggaccggagctgctattaccacaaggggacaatatttcccacctggcaaagtcgcagga
cctggggatcgcaaactctacttgttcattgagggtcctagcgagcagtcagttaagaga
gccaaagtagaattgaagcgtgttttggaagacatcactaaccaggctttgcaactacct
ggtggaactcaaccgggcaaatactctgttgtataa
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integrated database retrieval system
