Trifolium pratense (red clover): 123923576
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Entry
123923576 CDS
T08949
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03082
ATP-dependent chromatin remodeling
tpra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123923576
03083 Polycomb repressive complex
123923576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123923576
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
123923576
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
123923576
HDAC complexes
Sin3A-HDAC complex
123923576
BRAF-HDAC complex
123923576
REST complex
123923576
SHIP complex
123923576
MiDAC complex
123923576
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
123923576
Heterochromatin formation proteins
Other heterochromatin formation proteins
123923576
Chromatin remodeling factors
NuRD complex
123923576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
123923576
NCBI-ProteinID:
XP_045832225
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All DBs
Position
LG4:complement(15456652..15466244)
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSTELAKYNLGEDCPVFDNLFEFCQIYAGGTLDAACRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKCHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKT
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKRFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPEEIPENVYIKYFGPEFSLKIPNGHIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDLQNPDERIDQHTQDKHIQRDDEYYEGD
NDNDHQMDLP
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggacagaatcgcttacttttacgacggtgatgtgggtagtgtttacttt
gggccgaaccatcccatgaagcctcaccgcctttgcatgactcaccatcttgttctctcg
tatgatcttcataaaaagatggaaatttatcgcccacacaaagcttatcctgttgagctt
gcccagtttcattctgctgattatgttgagtttttgcacaggattacgcctgacactcag
cacttgttctcaactgaactggccaaatataatctcggagaagactgccctgtatttgac
aacttattcgaattttgtcagatttacgctggtggaactttagatgctgcatgtcgattg
aacaatcaactgtgcgatattgctataaactgggctggtggactccatcatgccaagaaa
tgtgaagcctctggattttgttacatcaatgacttggttttagggatcttagagcttctg
aaatgtcatccacgtgttttatatatcgatatagatgtgcaccacggtgatggtgtagaa
gaagccttctactttactgacagggtgatgactgtcagttttcacaagtatggagatatg
ttctttccaggaaccggtgacgctaaggaaataggagaaagagaagggaaattttatgcc
ataaatgtcccactcaaggatggaattgacgactctagcttcactagacttttcaagact
attatttccaaagtagttgaaacatatcaacctggtgcgatagttctccaatgtggagca
gattcacttgctggagatcgcttgggctgcttcaatctctctattgatggccatgctgaa
tgtgttagattcgtgaagagatttaatttgcccttactggttactggaggtgggggatac
acaaaagaaaatgttgctcgatgttggactgttgaaactggagttcttctagatacggaa
cttccagaagagatcccggagaatgtttatattaaatattttggaccagagttctcattg
aagattccaaatgggcacatagaaaatttgaatagcaagtcatatcttagcactataaaa
atgcaagtcttggagaatctacgctgcatccaacatgctccgagtgttcaaatgcaagag
gtcccacctgacttctacattcctgattttgatgaagatttgcagaaccctgatgagcgc
attgatcagcacactcaagacaagcacatccagcgcgacgatgaatattatgaaggtgac
aatgacaatgatcatcaaatggatcttccatga
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integrated database retrieval system