KEGG   Trifolium pratense (red clover): 123923576
Entry
123923576         CDS       T08949                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03082  ATP-dependent chromatin remodeling
tpra03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    123923576
   03083 Polycomb repressive complex
    123923576
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tpra03036]
    123923576
Enzymes [BR:tpra01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     123923576
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     123923576
   HDAC complexes
    Sin3A-HDAC complex
     123923576
    BRAF-HDAC complex
     123923576
    REST complex
     123923576
    SHIP complex
     123923576
    MiDAC complex
     123923576
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     123923576
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    123923576
  Chromatin remodeling factors
   NuRD complex
    123923576
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 123923576
NCBI-ProteinID: XP_045832225
LinkDB
Position
LG4:complement(15456652..15466244)
AA seq 430 aa
MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSTELAKYNLGEDCPVFDNLFEFCQIYAGGTLDAACRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKCHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKT
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKRFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPEEIPENVYIKYFGPEFSLKIPNGHIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDLQNPDERIDQHTQDKHIQRDDEYYEGD
NDNDHQMDLP
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacagaatcgcttacttttacgacggtgatgtgggtagtgtttacttt
gggccgaaccatcccatgaagcctcaccgcctttgcatgactcaccatcttgttctctcg
tatgatcttcataaaaagatggaaatttatcgcccacacaaagcttatcctgttgagctt
gcccagtttcattctgctgattatgttgagtttttgcacaggattacgcctgacactcag
cacttgttctcaactgaactggccaaatataatctcggagaagactgccctgtatttgac
aacttattcgaattttgtcagatttacgctggtggaactttagatgctgcatgtcgattg
aacaatcaactgtgcgatattgctataaactgggctggtggactccatcatgccaagaaa
tgtgaagcctctggattttgttacatcaatgacttggttttagggatcttagagcttctg
aaatgtcatccacgtgttttatatatcgatatagatgtgcaccacggtgatggtgtagaa
gaagccttctactttactgacagggtgatgactgtcagttttcacaagtatggagatatg
ttctttccaggaaccggtgacgctaaggaaataggagaaagagaagggaaattttatgcc
ataaatgtcccactcaaggatggaattgacgactctagcttcactagacttttcaagact
attatttccaaagtagttgaaacatatcaacctggtgcgatagttctccaatgtggagca
gattcacttgctggagatcgcttgggctgcttcaatctctctattgatggccatgctgaa
tgtgttagattcgtgaagagatttaatttgcccttactggttactggaggtgggggatac
acaaaagaaaatgttgctcgatgttggactgttgaaactggagttcttctagatacggaa
cttccagaagagatcccggagaatgtttatattaaatattttggaccagagttctcattg
aagattccaaatgggcacatagaaaatttgaatagcaagtcatatcttagcactataaaa
atgcaagtcttggagaatctacgctgcatccaacatgctccgagtgttcaaatgcaagag
gtcccacctgacttctacattcctgattttgatgaagatttgcagaaccctgatgagcgc
attgatcagcacactcaagacaagcacatccagcgcgacgatgaatattatgaaggtgac
aatgacaatgatcatcaaatggatcttccatga

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