Trifolium pratense (red clover): 123923745
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Entry
123923745 CDS
T08949
Name
(RefSeq) ubiquitin C-terminal hydrolase 13-like
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
123923745
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123923745
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123923745
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123923745
Peptidases and inhibitors [BR:
tpra01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
123923745
Ubiquitin system [BR:
tpra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
123923745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
DGCcoil
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
123923745
NCBI-ProteinID:
XP_045832425
LinkDB
All DBs
Position
LG4:complement(23026065..23040968)
Genome browser
AA seq
1124 aa
AA seq
DB search
MTVMTPAPIDQQQQQEDEEMLVSHTVPHADLAENNNHQPMDVVAQPETANTVEPVEDPSP
SRFTWRIDNFSRVNMKKLYSDVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGW
SRYAQFSLAVVNQIHNKYTVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLLNDTLI
IEAEVLVRKIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE
NDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLE
DKMKATVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYV
EVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFP
LQLDLDRDNGKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDE
RVTKEDPKRVLEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKEKVICNVD
EKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLGEQIGKDIYFDLVDHDK
VRSFRVQKQTPFNVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTQIEEAQSVGQ
LREISNKVHNAELKLFLEVERGLDLCPIAPPEKTKDDILLFFKLYDPEKEELRYVGRLFV
NSTGKPSEILARLNKMAHYDPDEEIGLYEEIKFEPNVMCEPIDKKLTFRASQLEDGDIIC
FQKAPAIDNEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVER
VAEQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIP
LPELQGLKTLKVAFHHATTDEVVIHTIRLPKQSTVGDVLDDLKTKVELSRPDAELRLLEV
FYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTTQNQMQI
QNFGEPFFLVIHESETLAEIRVRIQKKLQVPDDEFAKWKFAFFSLGRPEYLEDSDIVSSR
FQRRDVYGAWEQYLGLEHTDNAPKRSYAANQNRHTFEKPVKIYN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcatgactcctgctcccattgaccaacaacagcagcaggaggatgaagagatg
cttgtgtcgcacactgttccacatgctgatttggctgagaataataatcatcaacctatg
gatgttgttgctcaacctgaaaccgccaacactgtggagcctgtcgaggatccttcacca
tcaagattcacttggagaattgacaacttttcaagggtgaatatgaaaaagctctattca
gatgtatttgttgttgggagttacaaatggcgtgtgcttattttcccaaaaggaaacaat
gtggactatttgtccatgtatttggatgttgcagattcaactagtttgccctacggttgg
agtagatatgcacagtttagcttggcagttgttaatcaaattcataataagtacactgtg
agaaaagatacacagcatcagttcaatgcacgagaaagtgattggggtttcacatccttc
atgcctcttggtgaattgtatgatcctagtagagggtatcttttgaatgatactctcata
attgaagctgaggtccttgtccgtaagattgttgattactggacttatgattcaaaaaag
gagactggatatgttgggcttaagaaccagggagctacatgttatatgaattctctgctc
caaactctgtaccatattccttatttccgaaaggctgtataccatatgcctacaacagag
aatgatatgccctctggaagcatccccttggctctgcaaagtttgttttacaagctccag
tatagtgacaccagtgtcgcaacaaaagagctgactaaatcttttggatgggatacatat
gattctttcttgcagcatgatgttcaagaactaaatagagtcctgtgtgaaaagcttgaa
gacaaaatgaaggcaactgttgttgagggaactatacagaaattgtttgaagggcaccat
atgaactatattgagtgcatcaacgtggactataaatcaactcgaaaggagtcattttat
gatcttcaacttgatgtcaaaggttgtccagatgtttatgcttcctttgacaagtatgtt
gaagttgaacgtcttgagggggacaacaaataccacgctgaacaatatggtttgcaggat
gctaagaaaggtgtcctgttcatcgattttcctccagttttgcagcttcagctgaaaaga
tttgaatatgactttatgcgggatactatggtaaagattaatgatcgttatgagtttcca
ttgcaacttgatcttgatcgtgacaatggaaagtatttgtcacctgatgctgataggaat
gtccgcaatctttacacacttcatagcgttctggttcacagtggtggtgtgcatggcgga
cattactatgcttttatcaggccgactctctctgatcagtggtacaaatttgatgatgag
agggtgacaaaagaagatcctaaacgggtattagaggagcaatatggtggtgaggaagag
ttaccgcagacaaatcctggattcaataacactccttttaaatttaccaaatattcaaat
gcttatatgctggtgtatatacgtgaagctgacaaggaaaaagtaatatgcaatgtggat
gagaaagatattgctgagcatttaagggagaggttgaaaaaagaacaggaagaaaaagag
cacaaaaagaaagaaaaggcagaggctcacctctacactattataaaggtggcacgggat
gaagatcttggagaacagatcggaaaggatatatattttgatctggtagaccatgacaaa
gtgcggagtttccgtgtccaaaagcagacaccatttaatgttttcaaggaagaggttgct
aaagagtttggcatcccggttcaattccagcgcttttggctatgggcaaagcgtcaaaac
catacatatcgtcctaatcggccattgacacaaattgaggaagcacaatctgttggacaa
ttgagagagatatcgaacaaggttcacaatgcagaattaaaattgtttttggaagtcgag
cgtgggctggatttatgtcccattgcaccacctgagaagacaaaggatgatatattactt
tttttcaagttatatgatcctgaaaaagaggagctacgttacgttggcagactcttcgtg
aacagcactggtaagccatcagaaatcttagcaaggttaaataaaatggctcattatgat
cctgatgaggagattggactttatgaggaaattaagtttgaaccaaatgtgatgtgtgag
cctattgacaagaaattaacctttcgagcaagccagcttgaagatggagatattatatgc
tttcagaaagctcctgctattgataatgaggaacatatccgctatccggatgtgccttct
tacttagaatacgtgcacaatcgccaggttgttcacttccggtctctagataaaccaaag
gaagatgacttctgcctggagatgtcaaggctttacacatatgatgatgttgtggagaga
gtagctgaacaacttggtttggatgacccatccaaaatcaggctcactccacacaactgc
tactctcaacaaccaaaaccccagcctatcaagtaccgaggggtggaccatttatctgat
atgctggttcactacaatcagacatctgatatattgtactatgaagtacttgacatccct
ctgccagaattacaaggtttgaaaactctgaaagttgcatttcaccatgctactacggat
gaagtggttatccataccatcaggcttccaaagcaaagcactgtgggagatgtccttgat
gatcttaaaacgaaggttgaattgtctcgtcctgatgctgagcttaggttgcttgaagtt
ttctatcacaagatatacaaggttttccctcctaatgaaaagattgaaaacataaatgat
caatactggactctacgagcagaggagataccagaagaagagaaaaatctcggtcctcat
gatcgtctaatccatgtgtatcattttactaaagacacgactcagaaccaaatgcaaatt
cagaactttggggaacccttcttcttggtcatacacgaatctgagactttggctgaaatt
agagtgcggatacagaagaagctacaagttcctgatgatgagtttgccaagtggaagttt
gcctttttttcattagggcgtccggagtaccttgaggactctgacattgtatcaagtcgt
tttcagagaagagacgtatatggtgcttgggagcagtatcttggcttggagcatactgat
aatgctcccaaaagatcctatgctgctaaccagaatcgtcacacatttgagaagccagta
aagatttacaattag
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