Trichogramma pretiosum: 106658421
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Entry
106658421 CDS
T07644
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106658421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpre03021
]
106658421
03019 Messenger RNA biogenesis [BR:
tpre03019
]
106658421
Transcription machinery [BR:
tpre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106658421
Messenger RNA biogenesis [BR:
tpre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106658421
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
DNAPKcs_CC5
Motif
Other DBs
NCBI-GeneID:
106658421
NCBI-ProteinID:
XP_014235864
LinkDB
All DBs
Position
Unknown
AA seq
1607 aa
AA seq
DB search
MLSDMNPLSQGKATEIVEEYVSSLQDLKSNSKPYINMLTQLAEDYIEYASAIVAAVEVHL
LKVRNEIKLPVLYLIDSIVKNLGGSYLELFSKNIVQTFCKVFEKVDESTRSKMWKLRNTW
NDIFPAKQLYDLDVQVNNIDPAWPIVSVAKSLPTSAPKHVIHVNPQFLKQNAPKPVAEVS
PSKPAPYSGKTVLDKIVPDKKLPSKQIEIEASLQEQKMRDELLRKHEELKKLELKKQELE
QAALQHRQTITKSDKFANCGSSKVPMINKPSTSSNIVDNLDKKSVEKTLTIQSRAKLTTP
SLHPTDPRKKTVAALQNGNIEPSLPSSSHSKPKSCSPTPKTHTSPRISSPPPPLITKLRD
RSISPIKVEPRNPSPPLSPTKSSSSSSTKRRRSSKSSPHKKSRKRSHSPDEHRSRHHRHH
RQHRPKDQSSADEEKSGGSISLSPQSVSPEKSGRSRKRTRESKSPEITCKEESKRKDCCD
NKDEDLRVAAIAMKEIKDLDLRVLPPIPSKRQPTDTISSQSKKSKSEVFDELFGKEDVDL
RLLAPVTKTAQLVTSALPSVPPPPKISNDLKDNDSDSRSKFEHSRNDSNRSSIRDRPSRQ
KAFNKTEKRGNREYSERNSDRNIEIIMKQAAEQLNQGTITKAQYNKLIQEVLHMSEDQKL
KAAQRKEWESKGWERGDKGLRGKDHGMHPRVPGPRWQSPWHQPWTHGPGSFGTPPFRPPD
FRPMGPWQSHPRLFGPGPMRPDFHHQFHSGYNPRLGPPPMGPNGPIMLPNPMLGPMGPIA
TNLMMPVLSKRFSTSPDLNNKNEVDEMSSSSSGSNTPVTNVNNDDLPPADLKMVEEIEKD
SMKSINIDNVPREIRYYDNQGVIFMHWNDPRDIGFQNGARKIYIDGKEVAVCSFNDDFRE
FNYDGTIYRIKLGAPTRELFINDKWYQCYFGGASIPVELNGKKVNVKLDGPAPQVKIGQL
KRTDLVIGKINLIINARSMVPVFLDAKPQLIEIEGKPIILKFIDSLKVVLLNGKAFPVEF
GGLPKPVVIQGKKHFLRFSALPMGFKAGYVKIAGMEGEQPKEMEDQRSPASLPQLENSNN
SVPSPIEPDSGSQDGIDQSYIPKSDLRLDVLSSAVPSAMAPSSGLSYQTDLTIENASALS
AQLPLNLNELYQKLVETGIVTNLLEPKKPEEEEKKIEETVQVSFDKPESLKLRNPAVIET
LYSGIQCGSCPDRFAPEMATHYSHHLDWHFRQNRKEKESSKKAHSRTWYYEFNEWAQFEE
IEDLEDRAQSWFEIERQTMENENATTEDVFPDTMQPTVPAGMDDDAFCQVCREAFEQFYH
DEKEEWHLRPAISFDNKNFHPICLEDYKEKLFVKSFEDEHVLSPPLSPAPNDNETNNVDD
DPDVDKLDVKLEAEETNENNCEMQTMSDDISLEKIKCEPAEELVEPEMEEPEKNNSVVKA
NLEGSDTETNCEHEMATLVKEEILTPYQHIDDTNISKSIEDQSSNLTTESSNDCGAADES
TIRTSVDSTQVEVKSTIDGNVELESSISAVPATQSKIKINITKPIGTMNESAREKTHAKE
EPNAIEEELEVPPKPKSIKPAIRNKELKVLSKTVCKGEELSGLCSVM
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgctctccgacatgaatccattgagtcaaggaaaagcaactgagatcgtggaagagtat
gtttcttctctccaagatctcaaatccaacagcaaaccttacatcaatatgttgacacaa
ttagctgaagattacattgaatacgcatcagcgatagttgcagcagtagaagtccatttg
ctaaaggtgcggaatgagatcaaactacctgtactttatctcatcgattccattgttaaa
aacttgggtggatcctatttagaacttttctcaaagaatatagtccaaacattttgcaaa
gtatttgagaaggtggacgaaagtacaaggtcaaagatgtggaagctgagaaatacatgg
aatgacattttccctgccaagcagttatatgatttagatgtacaagttaacaatattgat
ccagcctggccaatagtgtcagttgcaaaatcgctaccaacatcagctccaaaacatgta
atacatgttaacccgcaatttttgaagcagaatgcaccgaaaccagtggctgaagtatct
ccatctaaacctgccccgtattcaggtaaaacagtactcgataagattgtacctgacaaa
aaattaccctcgaagcaaatagaaatagaagcatcactgcaagaacagaaaatgcgagat
gagttgttgagaaagcatgaagaattaaaaaaattggagttgaaaaaacaggagctcgaa
caagctgcactacagcacagacaaacaattacaaaatctgataaatttgccaattgtggt
tcttctaaagtacctatgataaataaacctagcacatcttcaaatattgttgacaacttg
gataaaaagtccgtagagaaaacgttgacgatacaaagtagagcaaaattaacaactcct
agcctgcatcccaccgatcctcggaaaaaaacagttgctgctcttcaaaatggcaatatt
gaaccgagtttaccgtcaagttcgcattcaaaaccaaaaagttgtagtccaacgccaaaa
acacatacttccccaagaatatcatcgccaccaccacctctgataacaaaattacgcgat
cgttccatcagcccgattaaggtagaacctcgtaatccatcaccccctttatcgccaaca
aaatcgtcatcctcgtcgtcaacaaaacgcagaagaagtagcaagtcttcacctcacaaa
aagtctcgaaaacgtagtcattcgccagatgaacatcgtagcagacatcatcggcatcat
cgtcaacacaggcctaaagatcagagttctgccgacgaagaaaaatctggtggatccatt
agtttatcaccccaatctgttagtcccgaaaaaagtggcagaagtaggaaaagaacaaga
gaaagtaagagtccggagattacatgcaaagaagagagcaaaaggaaagactgctgtgat
aataaagatgaagatcttagagttgctgcaattgctatgaaagaaataaaagatttggat
ttgcgagtccttccaccgattccgagcaaaagacagccaactgatacaatttcaagtcaa
tcgaaaaaaagcaagagcgaagtatttgacgaactgttcggcaaagaagacgtagatcta
cgattacttgcgccagttacaaaaacggcgcaacttgttacttcagcactaccatctgta
cctccaccacctaaaatatcaaatgatttgaaggataatgatagcgatagcaggtcgaaa
tttgaacattcgcgtaatgattccaatcgttcttcaatccgagatcgtccatcgcgtcaa
aaagccttcaacaaaacagaaaaacgaggcaacagagaatatagcgaaagaaattctgat
agaaatatcgaaattataatgaaacaagctgcagaacaactcaaccaaggaactataacg
aaagctcagtacaacaagttgatacaagaagttttacatatgagtgaggatcaaaaactc
aaagccgctcagagaaaagaatgggaaagtaaaggttgggaaagaggagacaaaggactg
cgagggaaggatcatggtatgcatcctagagtacctggtcctcgttggcaatcaccctgg
catcaaccctggacacacggtcctggttcatttggcacacctccttttcgtccaccagat
tttcggccaatgggtccttggcaaagtcaccctcggctctttggtcctggaccaatgcga
cctgatttccatcatcaatttcacagtggctacaatcctcgtcttggaccaccacctatg
ggtcctaatggacctattatgcttcctaatcctatgttgggaccaatgggacctatcgcc
actaaccttatgatgcctgtcttatctaaacgtttctcaacttctcccgatctgaataac
aaaaatgaagtcgatgaaatgagttccagctctagtggtagcaacaccccagtaacgaac
gtaaataatgatgatctaccgccagctgatcttaaaatggtcgaagaaatagaaaaggat
tctatgaaatcaatcaacattgataatgtacccagagaaataaggtattatgacaaccaa
ggtgtaatatttatgcattggaacgatcctagagatattggttttcaaaatggagccaga
aaaatttacatcgatggaaaagaagtggctgtttgtagcttcaatgatgattttagagaa
tttaattatgatggtaccatttataggataaagctgggagctccaacgcgtgaattattt
ataaacgataaatggtatcagtgttactttggaggtgcatcaatacccgttgaactgaat
ggcaaaaaagttaatgttaaattagatggaccagcgccgcaagtgaagattggtcaattg
aagcgaaccgatctggtaatcggtaaaattaatttaatcattaatgccagaagtatggtt
ccagttttcttggacgccaagcctcaattgattgaaatcgaaggcaaaccaattattctt
aagtttatcgattctcttaaagtagttttactcaatggtaaagcttttcctgtcgagttt
ggcggtttgcctaaaccagttgtgattcaaggaaagaaacattttttgcgcttttccgca
ttaccgatgggatttaaagctggttacgtaaaaattgccggtatggagggtgaacaacca
aaagagatggaagatcaacgatcccccgcgagcttaccgcagttggaaaattccaataat
tccgtgccgtctccgattgaacctgattctggatctcaagatggtatagatcaatcttac
atccctaaatctgatcttcgcctggatgttttgtcatcagcggtaccatcagcaatggca
ccatcatcgggtctttcttatcaaacagatttaactatagaaaatgcatcagcgctcagc
gctcagttaccgttaaatcttaatgaactttatcaaaagttggttgaaacaggaattgtg
acgaatcttcttgaaccaaaaaaaccagaagaagaagagaaaaaaattgaagaaactgtt
caagtgtcattcgataagccagagagcttaaaattaaggaatcctgcagtcattgaaaca
ctttacagcggaattcaatgtggaagctgtcctgacagatttgcccctgaaatggctacg
cattacagtcatcatttagattggcacttcaggcagaaccgtaaagaaaaagaatcatcg
aaaaaagcacattccagaacttggtattatgaatttaatgaatgggcacagtttgaagag
atagaagaccttgaagatagagcgcaaagttggtttgaaatcgaaaggcagacgatggaa
aacgaaaatgctactactgaagacgtgtttcctgacaccatgcagcctaccgttcccgct
ggcatggatgacgatgccttttgtcaagtttgcagagaggcattcgaacaattctatcac
gatgaaaaagaagaatggcaccttagaccggctattagtttcgataacaaaaattttcat
cctatatgcttagaagattataaggaaaaactttttgtgaaatctttcgaggatgaacat
gttctatcacctccattatcgcctgcaccaaatgacaatgaaactaataacgttgatgat
gatccggatgtagacaagttggatgtaaaactagaagcagaagaaacaaatgaaaacaat
tgtgaaatgcaaacaatgagtgatgatatttcacttgaaaaaataaaatgtgaaccagct
gaagaactcgttgaacctgaaatggaagaaccagaaaaaaataattcagttgtaaaagca
aatttagaaggaagtgatactgaaacaaattgtgaacacgaaatggccacgcttgtgaag
gaggaaattttaacaccctatcaacacattgatgatacaaacatctcaaaatcaatcgag
gaccaatcaagtaatttaactaccgaatcgtcaaatgactgtggagcagcagatgaaagt
acaatacgaacttcggttgattcaacacaagttgaagtcaaaagtaccattgatggtaat
gtagagttagagtcctcaatatctgctgtgccggctactcaatctaaaattaaaatcaac
attaccaaaccaattggaactatgaatgaatctgcccgggaaaaaactcatgcaaaagaa
gaacctaatgcgattgaagaagaactggaagtgccaccaaaaccgaaatcaattaagcca
gctattcgtaataaagaattgaaggttttatcaaaaactgtttgtaaaggtgaagagctt
tcagggctatgttcagtaatgtaa
DBGET
integrated database retrieval system
