Thalassiosira pseudonana: THAPSDRAFT_21220
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Entry
THAPSDRAFT_21220 CDS
T01078
Name
(RefSeq) predicted protein
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
tps
Thalassiosira pseudonana
Pathway
tps03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
THAPSDRAFT_21220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_21220
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
THAPSDRAFT_21220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
LRR_6
Motif
Other DBs
NCBI-GeneID:
7450193
NCBI-ProteinID:
XP_002287750
JGI:
21220
UniProt:
B8BTZ8
LinkDB
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Position
2:complement(673536..677363)
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AA seq
1003 aa
AA seq
DB search
MSGKEAIVFILDSNHSMNAPYPPGGYTTTSTSPSAVGGNPPSPIKSNPTAINVDEYDDAT
VDLETQSTRLSSAKDSILAKISELAFRSKTNEVGVVVLKTKRTHHHMFLSDAADDGLSKL
FRSSSSRMDNYYDDDDDENPPFPNLVEFNLNRPSPHLLRDIHSIQSTTTPHPSSSSTIQG
DFCDGIILAADTLYRRTAGKKYIRKIILFTDAEHEVRIDGEQLETVLSGLEKMDCSLEVV
GIGFDVENTGSFRIKEEEKVEGDEGEGDEDGDGGADSDENDVEEETDVKEEGDADGDNLK
MDVGQSENDIKLLIKRENEKLLVSLAQQTGGCVMAANGQDISALLETNDPRNNEGMTKSI
RGKFILSKYVDAATIPYLKREAYVLDSTTGLPQRDGLGELITCGVDRNTTHWIEEDPDVP
NEGLLEVPLDSRTDAYRFGSDLIPVGKMDMLGIKAAFASPRSIEMIGYISKRDVISSGLC
MGPAYVVLGGKESKKSRGAIAALSLAMEEKGVWGFCRFVKSVNGDPCIGVLIPKLVGSDG
GNGEGGRFLALLQLPFADDISHISTPAVPAENWGDDKEAKACDSLVESMMLEDDELDSTT
ISSPSIQAYHRMITHFAMDPLTGEVELNGDLPEEKILMASHASPLCELGVVKSLSMKASN
QINAFLETFPREKIALDGDKKENKKHWGDDSQTSSSSPSSIRLGPQLMNRSSSLDVIPPH
NQLVPYWSLLSKAFEERNTIDMWIVADALSMAFKSHPCLQSVTLDRCKVGNDTRVLATLL
NGMKHVKTISLKGNNITSEGAHIIAHFLDGNACSTHVHLDDNPIKDDATFSFASALKQNT
TLRFLGLNNTEISELGNIILRRALFDTSSLNSVADSNHDCVISIDWSSLALGWKIPDING
KRSWSKERKVKAKILLALCIMNEVPLKLSYFDEVPLEIMPYILAMIQEHIVDDGHGWYYR
YLSGGVITEDEAKQKKTAFEIKSLNRLFHTLKGWHRDHDFCEL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaaggaggcaatcgtcttcatcttggactctaaccattccatgaatgctccc
tatccacctggaggctacacaaccacctcaacgtctccatcggcggtaggtggcaacccc
ccctctcccatcaagtcaaatcctactgctattaatgtagatgaatacgacgatgcgaca
gttgatctcgaaacacaatccactcgtctaagtagtgccaaggattcaatactagctaaa
atcagcgagcttgcctttcgttccaaaaccaacgaagttggcgttgtcgttctcaagacg
aagagaacacatcatcatatgttcttgtccgatgctgctgatgatgggttgagcaagttg
tttcgaagcagttcatcacgaatggacaattactacgatgacgacgatgatgagaatcct
ccatttccaaacttggtggagttcaatctaaacagaccatctcctcacctcctacgtgac
atacattccatccaaagtaccaccactcctcatccctcatcatcttctacaatccaaggt
gacttttgcgacggcatcattctagcagctgacacactctaccgtcgtaccgcaggaaag
aagtacattcgcaagattatcctcttcaccgatgcagagcacgaggtacggattgacgga
gaacaattggagacagtgctgagtgggttggagaagatggattgttctttggaagttgtg
gggattggatttgacgttgagaatacagggagttttcgtatcaaggaggaagagaaggtt
gagggtgatgagggagaaggtgacgaggatggtgatgggggtgctgattcggatgagaac
gacgtggaagaagaaactgacgtcaaagaagagggagatgctgatggagacaatctcaag
atggacgttggccagtcagaaaatgatatcaagctactcatcaaacgagagaatgaaaaa
ttgcttgttagccttgctcaacaaactggtggatgcgtcatggcggcaaacggtcaagat
atctcggcactactcgaaaccaacgatcccaggaacaacgaaggaatgaccaaatcaatc
agaggcaagttcatcttgtccaagtacgttgatgccgcgactattccatacctcaaacgt
gaggcttatgtgttggattcaacgacggggctgcctcagcgtgatggacttggtgaacta
attacgtgtggagtcgataggaatacaactcattggattgaagaggatccagatgttcct
aacgagggacttcttgaggtgcctttggacagcagaacagatgcctatcgttttggtagt
gatcttatccctgtcggaaagatggatatgttgggtatcaaagctgcgtttgcttctcca
aggagtatcgagatgataggatacatctccaagagagacgtcatctcttcaggactttgc
atgggaccggcgtacgttgtgttaggaggcaaagagtccaagaagtcacgtggagctatt
gcagcattgtcattggcgatggaagaaaagggtgtttggggcttttgtcgcttcgtcaag
tcagtcaatggggatccttgtattggagtgttgattccaaagctcgttggcagcgatgga
ggaaatggagaaggaggaaggttccttgcacttcttcagctaccctttgctgatgacata
tctcacatctcgactccagcagttccggctgagaattggggcgacgacaaggaagcgaaa
gcatgtgactctttggttgagtcaatgatgctagaggacgatgaacttgacagtacaacc
atttcctctccttctattcaagcgtatcatcgtatgattactcatttcgcaatggatcct
ctcaccggtgaagtggagctcaacggagacctacccgaggaaaagattctgatggcttcc
catgcaagccctctttgtgagttgggtgtggtcaaatcactgtcgatgaaggcatcaaat
caaatcaatgcatttttggaaacattccctcgcgagaagattgcacttgatggcgataag
aaggaaaacaagaagcattggggagatgatagtcaaacatcgtcctcttctccgtcatct
attcgtctgggaccacagttgatgaatcgttcaagctcgcttgatgtcataccaccccac
aaccaactcgtaccttattggtcattactatcaaaggcttttgaagaacgcaataccatt
gatatgtggatagttgcagacgccttatctatggcgtttaagagccatccttgcctacaa
tccgtaactttggatagatgcaaagttggaaatgatactcgtgtccttgcaacgcttctc
aatggcatgaaacacgtcaagacgattagtctcaagggcaacaatatcacatcagagggt
gctcacattattgcacactttttggacgggaacgcttgctctacacatgtacatctggac
gacaacccaatcaaggatgatgcgacattcagttttgcatctgccttgaagcagaataca
actctgagattcctcggattgaacaacaccgagatatccgagctaggaaacataatattg
aggagagctctctttgacacaagcagtttgaactctgttgctgattcaaaccatgattgt
gttattagtatcgattggagctcactagcattgggctggaagatccctgatataaatggt
aagagatcttggagcaaagaaaggaaagtcaaggccaagatcttgcttgcactttgcatc
atgaatgaggtacctctcaaactcagttatttcgatgaagtacctctcgaaattatgcct
tacattctagctatgattcaagagcacattgtcgacgatgggcacggttggtactaccgc
tatttgtctggaggtgtcataacggaagatgaagcaaaacaaaagaagacggcgtttgag
atcaagtcattgaatcgtttatttcacacactgaaggggtggcatcgagaccatgacttt
tgtgagctgtga
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